Hb_000029_180

Information

Type -
Description -
Location Contig29: 187750-194270
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_012073065.1
description PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000029_180 0.0 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
2 Hb_000465_380 0.077006035 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
3 Hb_030370_070 0.0875289215 - - ATP binding protein, putative [Ricinus communis]
4 Hb_002218_060 0.1100339798 - - conserved hypothetical protein [Ricinus communis]
5 Hb_108055_010 0.1110698982 - - UDP-glucosyltransferase, putative [Ricinus communis]
6 Hb_010327_010 0.1248308142 - - calcium ion binding protein, putative [Ricinus communis]
7 Hb_129399_010 0.1354638057 - - cytochrome P450, putative [Ricinus communis]
8 Hb_005048_080 0.1416992159 - - PREDICTED: PAP-specific phosphatase HAL2-like [Jatropha curcas]
9 Hb_004712_140 0.1505140864 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
10 Hb_001677_130 0.1506670868 - - hypothetical protein POPTR_0081s002101g, partial [Populus trichocarpa]
11 Hb_000117_110 0.1521912412 - - transferase, putative [Ricinus communis]
12 Hb_003376_150 0.1526853512 - - PREDICTED: peroxidase 21 [Jatropha curcas]
13 Hb_000286_180 0.153222794 - - PREDICTED: dnaJ homolog subfamily B member 4 [Jatropha curcas]
14 Hb_000333_120 0.1540078822 - - PREDICTED: thiol protease aleurain-like [Jatropha curcas]
15 Hb_000146_110 0.1540533407 - - resveratrol/hydroxycinnamic acid O-glucosyltransferase [Vitis labrusca]
16 Hb_000398_200 0.1545790636 - - PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]
17 Hb_000044_050 0.1556183498 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
18 Hb_001534_150 0.1593395905 - - PREDICTED: uncharacterized permease C29B12.14c [Jatropha curcas]
19 Hb_010921_060 0.1595747197 - - ATP binding protein, putative [Ricinus communis]
20 Hb_006052_040 0.1642984706 - - pyruvate decarboxylase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000029_180 Hb_000029_180 Hb_000465_380 Hb_000465_380 Hb_000029_180--Hb_000465_380 Hb_030370_070 Hb_030370_070 Hb_000029_180--Hb_030370_070 Hb_002218_060 Hb_002218_060 Hb_000029_180--Hb_002218_060 Hb_108055_010 Hb_108055_010 Hb_000029_180--Hb_108055_010 Hb_010327_010 Hb_010327_010 Hb_000029_180--Hb_010327_010 Hb_129399_010 Hb_129399_010 Hb_000029_180--Hb_129399_010 Hb_000465_380--Hb_108055_010 Hb_010921_060 Hb_010921_060 Hb_000465_380--Hb_010921_060 Hb_000465_380--Hb_030370_070 Hb_000465_380--Hb_129399_010 Hb_002239_020 Hb_002239_020 Hb_000465_380--Hb_002239_020 Hb_001534_150 Hb_001534_150 Hb_030370_070--Hb_001534_150 Hb_008550_030 Hb_008550_030 Hb_030370_070--Hb_008550_030 Hb_001989_080 Hb_001989_080 Hb_030370_070--Hb_001989_080 Hb_107552_020 Hb_107552_020 Hb_030370_070--Hb_107552_020 Hb_000117_110 Hb_000117_110 Hb_002218_060--Hb_000117_110 Hb_001677_130 Hb_001677_130 Hb_002218_060--Hb_001677_130 Hb_003867_030 Hb_003867_030 Hb_002218_060--Hb_003867_030 Hb_000398_200 Hb_000398_200 Hb_002218_060--Hb_000398_200 Hb_002218_060--Hb_030370_070 Hb_108055_010--Hb_129399_010 Hb_108055_010--Hb_010327_010 Hb_108055_010--Hb_010921_060 Hb_000333_120 Hb_000333_120 Hb_108055_010--Hb_000333_120 Hb_004712_140 Hb_004712_140 Hb_010327_010--Hb_004712_140 Hb_007371_020 Hb_007371_020 Hb_010327_010--Hb_007371_020 Hb_000003_620 Hb_000003_620 Hb_010327_010--Hb_000003_620 Hb_010327_010--Hb_000117_110 Hb_000146_110 Hb_000146_110 Hb_010327_010--Hb_000146_110 Hb_010620_020 Hb_010620_020 Hb_129399_010--Hb_010620_020 Hb_129399_010--Hb_000146_110 Hb_129399_010--Hb_000003_620 Hb_129399_010--Hb_010921_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.501633 0.0322852 0.0418726 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0595653 0.142264

CAGE analysis