Hb_000003_620

Information

Type -
Description -
Location Contig3: 468010-476721
Sequence    

Annotation

kegg
ID rcu:RCOM_1490000
description ATP-binding cassette transporter, putative (EC:3.6.3.28)
nr
ID XP_012069091.1
description PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
swissprot
ID Q94A18
description ABC transporter G family member 29 OS=Arabidopsis thaliana GN=ABCG29 PE=2 SV=2
trembl
ID A0A067KXD6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24865 PE=4 SV=1
Gene Ontology
ID GO:0016020
description abc transporter g family member 29-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31442: 473487-474293
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_620 0.0 - - PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
2 Hb_000146_110 0.0587718399 - - resveratrol/hydroxycinnamic acid O-glucosyltransferase [Vitis labrusca]
3 Hb_009778_030 0.0767660288 transcription factor TF Family: TCP PREDICTED: transcription factor TCP23-like [Populus euphratica]
4 Hb_000111_130 0.0786875751 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
5 Hb_001363_030 0.0808133676 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Populus euphratica]
6 Hb_007371_020 0.0906644301 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
7 Hb_001365_040 0.1000102851 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g05700 isoform X2 [Populus euphratica]
8 Hb_010962_030 0.1066472341 - - kinase, putative [Ricinus communis]
9 Hb_001274_040 0.1089143695 - - PREDICTED: uncharacterized protein LOC105636321 [Jatropha curcas]
10 Hb_010620_020 0.1089639142 - - receptor protein kinase, putative [Ricinus communis]
11 Hb_002890_060 0.1090928691 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Eucalyptus grandis]
12 Hb_010327_010 0.1125470207 - - calcium ion binding protein, putative [Ricinus communis]
13 Hb_005054_300 0.1147944859 - - aquaporin [Hevea brasiliensis]
14 Hb_129399_010 0.1153594069 - - cytochrome P450, putative [Ricinus communis]
15 Hb_000123_310 0.1269051435 - - PREDICTED: aquaporin TIP1-3 [Jatropha curcas]
16 Hb_002025_370 0.1279660043 - - monooxygenase, putative [Ricinus communis]
17 Hb_108055_010 0.132363484 - - UDP-glucosyltransferase, putative [Ricinus communis]
18 Hb_002294_010 0.136453015 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
19 Hb_004712_140 0.1432569993 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
20 Hb_021596_070 0.1451277761 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000003_620 Hb_000003_620 Hb_000146_110 Hb_000146_110 Hb_000003_620--Hb_000146_110 Hb_009778_030 Hb_009778_030 Hb_000003_620--Hb_009778_030 Hb_000111_130 Hb_000111_130 Hb_000003_620--Hb_000111_130 Hb_001363_030 Hb_001363_030 Hb_000003_620--Hb_001363_030 Hb_007371_020 Hb_007371_020 Hb_000003_620--Hb_007371_020 Hb_001365_040 Hb_001365_040 Hb_000003_620--Hb_001365_040 Hb_000146_110--Hb_009778_030 Hb_002890_060 Hb_002890_060 Hb_000146_110--Hb_002890_060 Hb_000146_110--Hb_000111_130 Hb_000123_310 Hb_000123_310 Hb_000146_110--Hb_000123_310 Hb_000146_110--Hb_007371_020 Hb_009778_030--Hb_002890_060 Hb_009778_030--Hb_000111_130 Hb_009778_030--Hb_000123_310 Hb_009778_030--Hb_001363_030 Hb_001274_040 Hb_001274_040 Hb_000111_130--Hb_001274_040 Hb_000111_130--Hb_002890_060 Hb_000111_130--Hb_001365_040 Hb_001363_030--Hb_001365_040 Hb_004970_130 Hb_004970_130 Hb_001363_030--Hb_004970_130 Hb_118777_010 Hb_118777_010 Hb_001363_030--Hb_118777_010 Hb_001363_030--Hb_000111_130 Hb_010962_030 Hb_010962_030 Hb_007371_020--Hb_010962_030 Hb_021596_070 Hb_021596_070 Hb_007371_020--Hb_021596_070 Hb_007371_020--Hb_009778_030 Hb_010327_010 Hb_010327_010 Hb_007371_020--Hb_010327_010 Hb_001013_010 Hb_001013_010 Hb_001365_040--Hb_001013_010 Hb_002025_370 Hb_002025_370 Hb_001365_040--Hb_002025_370 Hb_001365_040--Hb_009778_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00479007 15.4994 0.817107 0.796911 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0175613 0.00691033 0.0133017 3.42133 1.67747

CAGE analysis