Hb_004055_100

Information

Type transcription factor
Description TF Family: MYB
Location Contig4055: 74284-76044
Sequence    

Annotation

kegg
ID pop:POPTR_0001s20370g
description hypothetical protein
nr
ID XP_012068953.1
description PREDICTED: transcription factor MYB86 [Jatropha curcas]
swissprot
ID Q9SPG3
description Transcription factor MYB26 OS=Arabidopsis thaliana GN=MYB26 PE=2 SV=1
trembl
ID A0A067KXA7
description MYB family protein OS=Jatropha curcas GN=JCGZ_24751 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription factor myb86

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40216: 75374-75734
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004055_100 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
2 Hb_022108_010 0.0883843687 - - G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Glycine soja]
3 Hb_005542_110 0.0935873412 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01203 [Jatropha curcas]
4 Hb_005333_100 0.1167428076 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001907_020 0.1227719733 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
6 Hb_000120_980 0.1231242549 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 5-like [Jatropha curcas]
7 Hb_000684_010 0.1255098271 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
8 Hb_003469_010 0.1317298675 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
9 Hb_001454_160 0.1431297474 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
10 Hb_002475_100 0.1448083165 - - PREDICTED: uncharacterized protein LOC105645451 [Jatropha curcas]
11 Hb_152718_010 0.1461195359 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
12 Hb_000976_060 0.1487463518 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
13 Hb_000876_050 0.1489252701 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like [Jatropha curcas]
14 Hb_018563_040 0.1516269277 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
15 Hb_001009_110 0.1548446789 - - PREDICTED: uncharacterized protein LOC105640232 [Jatropha curcas]
16 Hb_002783_300 0.158268569 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
17 Hb_011174_100 0.1585698239 - - ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_005489_160 0.1616183712 - - PREDICTED: primary amine oxidase-like [Jatropha curcas]
19 Hb_007709_010 0.1626464441 - - -
20 Hb_000343_260 0.1647701005 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]

Gene co-expression network

sample Hb_004055_100 Hb_004055_100 Hb_022108_010 Hb_022108_010 Hb_004055_100--Hb_022108_010 Hb_005542_110 Hb_005542_110 Hb_004055_100--Hb_005542_110 Hb_005333_100 Hb_005333_100 Hb_004055_100--Hb_005333_100 Hb_001907_020 Hb_001907_020 Hb_004055_100--Hb_001907_020 Hb_000120_980 Hb_000120_980 Hb_004055_100--Hb_000120_980 Hb_000684_010 Hb_000684_010 Hb_004055_100--Hb_000684_010 Hb_022108_010--Hb_001907_020 Hb_022108_010--Hb_005542_110 Hb_022108_010--Hb_000684_010 Hb_022108_010--Hb_000120_980 Hb_003469_010 Hb_003469_010 Hb_022108_010--Hb_003469_010 Hb_005542_110--Hb_000684_010 Hb_011174_100 Hb_011174_100 Hb_005542_110--Hb_011174_100 Hb_005542_110--Hb_005333_100 Hb_000876_050 Hb_000876_050 Hb_005542_110--Hb_000876_050 Hb_000976_060 Hb_000976_060 Hb_005542_110--Hb_000976_060 Hb_005333_100--Hb_000120_980 Hb_005333_100--Hb_000684_010 Hb_005333_100--Hb_000976_060 Hb_001838_010 Hb_001838_010 Hb_005333_100--Hb_001838_010 Hb_000255_020 Hb_000255_020 Hb_005333_100--Hb_000255_020 Hb_000489_020 Hb_000489_020 Hb_005333_100--Hb_000489_020 Hb_011344_140 Hb_011344_140 Hb_001907_020--Hb_011344_140 Hb_000649_280 Hb_000649_280 Hb_001907_020--Hb_000649_280 Hb_026053_030 Hb_026053_030 Hb_001907_020--Hb_026053_030 Hb_002045_220 Hb_002045_220 Hb_001907_020--Hb_002045_220 Hb_000120_980--Hb_000684_010 Hb_000120_980--Hb_000876_050 Hb_000120_980--Hb_005542_110 Hb_000086_370 Hb_000086_370 Hb_000120_980--Hb_000086_370 Hb_002475_100 Hb_002475_100 Hb_000120_980--Hb_002475_100 Hb_000684_010--Hb_000876_050 Hb_001675_130 Hb_001675_130 Hb_000684_010--Hb_001675_130 Hb_007709_010 Hb_007709_010 Hb_000684_010--Hb_007709_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.81269 0.0497889 0.193172 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.956357 0.424057

CAGE analysis