Hb_003469_010

Information

Type -
Description -
Location Contig3469: 11017-29378
Sequence    

Annotation

kegg
ID cit:102625082
description probable LRR receptor-like serine/threonine-protein kinase At3g47570-like
nr
ID XP_012091026.1
description PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
swissprot
ID Q9LYN8
description Leucine-rich repeat receptor protein kinase EMS1 OS=Arabidopsis thaliana GN=EMS1 PE=1 SV=1
trembl
ID A0A068VGC6
description Coffea canephora DH200=94 genomic scaffold, scaffold_589 OS=Coffea canephora GN=GSCOC_T00009252001 PE=4 SV=1
Gene Ontology
ID GO:0016772
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003469_010 0.0 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
2 Hb_004055_100 0.1317298675 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
3 Hb_005542_110 0.1477597444 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01203 [Jatropha curcas]
4 Hb_022108_010 0.1486519129 - - G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Glycine soja]
5 Hb_020581_040 0.1498536045 - - PREDICTED: inactive protein kinase SELMODRAFT_444075-like isoform X3 [Sesamum indicum]
6 Hb_001454_160 0.1600909489 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
7 Hb_011174_100 0.1602757021 - - ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_169388_010 0.166684439 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
9 Hb_000876_050 0.1674736373 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like [Jatropha curcas]
10 Hb_018563_040 0.1690840789 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
11 Hb_002555_020 0.1704772275 - - Receptor-like protein kinase [Medicago truncatula]
12 Hb_005489_160 0.1706945285 - - PREDICTED: primary amine oxidase-like [Jatropha curcas]
13 Hb_005333_100 0.1826775099 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000221_170 0.183298103 - - PREDICTED: alcohol dehydrogenase-like 2 [Jatropha curcas]
15 Hb_151694_010 0.1835597877 - - PREDICTED: BURP domain-containing protein 17-like isoform X2 [Jatropha curcas]
16 Hb_000120_980 0.1841663584 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 5-like [Jatropha curcas]
17 Hb_000684_010 0.1847639399 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
18 Hb_002475_100 0.1877162928 - - PREDICTED: uncharacterized protein LOC105645451 [Jatropha curcas]
19 Hb_007709_010 0.1939692622 - - -
20 Hb_151364_010 0.1948008072 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]

Gene co-expression network

sample Hb_003469_010 Hb_003469_010 Hb_004055_100 Hb_004055_100 Hb_003469_010--Hb_004055_100 Hb_005542_110 Hb_005542_110 Hb_003469_010--Hb_005542_110 Hb_022108_010 Hb_022108_010 Hb_003469_010--Hb_022108_010 Hb_020581_040 Hb_020581_040 Hb_003469_010--Hb_020581_040 Hb_001454_160 Hb_001454_160 Hb_003469_010--Hb_001454_160 Hb_011174_100 Hb_011174_100 Hb_003469_010--Hb_011174_100 Hb_004055_100--Hb_022108_010 Hb_004055_100--Hb_005542_110 Hb_005333_100 Hb_005333_100 Hb_004055_100--Hb_005333_100 Hb_001907_020 Hb_001907_020 Hb_004055_100--Hb_001907_020 Hb_000120_980 Hb_000120_980 Hb_004055_100--Hb_000120_980 Hb_000684_010 Hb_000684_010 Hb_004055_100--Hb_000684_010 Hb_005542_110--Hb_000684_010 Hb_005542_110--Hb_011174_100 Hb_005542_110--Hb_005333_100 Hb_000876_050 Hb_000876_050 Hb_005542_110--Hb_000876_050 Hb_000976_060 Hb_000976_060 Hb_005542_110--Hb_000976_060 Hb_022108_010--Hb_001907_020 Hb_022108_010--Hb_005542_110 Hb_022108_010--Hb_000684_010 Hb_022108_010--Hb_000120_980 Hb_020581_050 Hb_020581_050 Hb_020581_040--Hb_020581_050 Hb_002555_020 Hb_002555_020 Hb_020581_040--Hb_002555_020 Hb_169388_010 Hb_169388_010 Hb_020581_040--Hb_169388_010 Hb_000792_060 Hb_000792_060 Hb_020581_040--Hb_000792_060 Hb_000088_160 Hb_000088_160 Hb_020581_040--Hb_000088_160 Hb_001454_160--Hb_002555_020 Hb_018563_040 Hb_018563_040 Hb_001454_160--Hb_018563_040 Hb_001454_160--Hb_000976_060 Hb_001454_160--Hb_005542_110 Hb_152718_010 Hb_152718_010 Hb_001454_160--Hb_152718_010 Hb_001489_030 Hb_001489_030 Hb_001454_160--Hb_001489_030 Hb_011174_100--Hb_000876_050 Hb_007709_010 Hb_007709_010 Hb_011174_100--Hb_007709_010 Hb_000512_040 Hb_000512_040 Hb_011174_100--Hb_000512_040 Hb_011174_100--Hb_001454_160 Hb_011174_100--Hb_000684_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.249726 0 0.0156527 0 0.00512883
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.169586 0.0638325

CAGE analysis