Hb_000792_060

Information

Type -
Description -
Location Contig792: 113870-121304
Sequence    

Annotation

kegg
ID rcu:RCOM_0085210
description hypothetical protein
nr
ID XP_002527865.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SPE6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0085210 PE=4 SV=1
Gene Ontology
ID GO:0008233
description cysteine proteinases superfamily protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58396: 118523-118917
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000792_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001251_070 0.1694972939 - - PREDICTED: probable aldo-keto reductase 2, partial [Populus euphratica]
3 Hb_000088_160 0.1922866546 - - PREDICTED: uncharacterized protein LOC105629775 [Jatropha curcas]
4 Hb_007618_010 0.1991885495 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
5 Hb_020581_040 0.2082223245 - - PREDICTED: inactive protein kinase SELMODRAFT_444075-like isoform X3 [Sesamum indicum]
6 Hb_007163_140 0.2351854797 transcription factor TF Family: bHLH hypothetical protein JCGZ_12606 [Jatropha curcas]
7 Hb_007253_040 0.2391110529 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]
8 Hb_001373_010 0.2446097828 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
9 Hb_058325_010 0.2496989504 - - Disease resistance protein RFL1, putative [Ricinus communis]
10 Hb_006829_050 0.2501053692 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
11 Hb_169620_010 0.2515367553 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
12 Hb_000450_180 0.2539165042 - - Disease resistance protein RPS5, putative [Ricinus communis]
13 Hb_000521_300 0.2545823888 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
14 Hb_163658_010 0.2551091446 - - Disease resistance protein RPS5, putative [Ricinus communis]
15 Hb_151706_010 0.2555456853 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
16 Hb_020581_030 0.2556725431 - - -
17 Hb_011861_110 0.258466906 - - PREDICTED: uncharacterized protein LOC105636580 [Jatropha curcas]
18 Hb_000589_130 0.2588803944 desease resistance Gene Name: NB-ARC unnamed protein product [Vitis vinifera]
19 Hb_000532_130 0.2643536162 - - hypothetical protein [Anabaena sp. PCC 7108]
20 Hb_000685_040 0.2651481548 - - hypothetical protein OsJ_17676 [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_000792_060 Hb_000792_060 Hb_001251_070 Hb_001251_070 Hb_000792_060--Hb_001251_070 Hb_000088_160 Hb_000088_160 Hb_000792_060--Hb_000088_160 Hb_007618_010 Hb_007618_010 Hb_000792_060--Hb_007618_010 Hb_020581_040 Hb_020581_040 Hb_000792_060--Hb_020581_040 Hb_007163_140 Hb_007163_140 Hb_000792_060--Hb_007163_140 Hb_007253_040 Hb_007253_040 Hb_000792_060--Hb_007253_040 Hb_001251_070--Hb_007253_040 Hb_000589_130 Hb_000589_130 Hb_001251_070--Hb_000589_130 Hb_010605_010 Hb_010605_010 Hb_001251_070--Hb_010605_010 Hb_000450_180 Hb_000450_180 Hb_001251_070--Hb_000450_180 Hb_029393_020 Hb_029393_020 Hb_001251_070--Hb_029393_020 Hb_000521_300 Hb_000521_300 Hb_000088_160--Hb_000521_300 Hb_000088_160--Hb_007618_010 Hb_133636_010 Hb_133636_010 Hb_000088_160--Hb_133636_010 Hb_002783_320 Hb_002783_320 Hb_000088_160--Hb_002783_320 Hb_001454_340 Hb_001454_340 Hb_000088_160--Hb_001454_340 Hb_164010_090 Hb_164010_090 Hb_000088_160--Hb_164010_090 Hb_008175_030 Hb_008175_030 Hb_007618_010--Hb_008175_030 Hb_000532_130 Hb_000532_130 Hb_007618_010--Hb_000532_130 Hb_057079_020 Hb_057079_020 Hb_007618_010--Hb_057079_020 Hb_002739_060 Hb_002739_060 Hb_007618_010--Hb_002739_060 Hb_007618_010--Hb_007253_040 Hb_003469_010 Hb_003469_010 Hb_020581_040--Hb_003469_010 Hb_020581_050 Hb_020581_050 Hb_020581_040--Hb_020581_050 Hb_002555_020 Hb_002555_020 Hb_020581_040--Hb_002555_020 Hb_169388_010 Hb_169388_010 Hb_020581_040--Hb_169388_010 Hb_020581_040--Hb_000088_160 Hb_020581_030 Hb_020581_030 Hb_007163_140--Hb_020581_030 Hb_004041_080 Hb_004041_080 Hb_007163_140--Hb_004041_080 Hb_005380_040 Hb_005380_040 Hb_007163_140--Hb_005380_040 Hb_011861_110 Hb_011861_110 Hb_007163_140--Hb_011861_110 Hb_101089_010 Hb_101089_010 Hb_007163_140--Hb_101089_010 Hb_003175_020 Hb_003175_020 Hb_007163_140--Hb_003175_020 Hb_007253_040--Hb_000532_130 Hb_007259_020 Hb_007259_020 Hb_007253_040--Hb_007259_020 Hb_007253_040--Hb_008175_030 Hb_060909_010 Hb_060909_010 Hb_007253_040--Hb_060909_010 Hb_008226_100 Hb_008226_100 Hb_007253_040--Hb_008226_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.581592 0.026316 0.0950554 0 0.229111
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.435478 0.118502

CAGE analysis