Hb_007618_010

Information

Type -
Description -
Location Contig7618: 3-2485
Sequence    

Annotation

kegg
ID pop:POPTR_0011s10430g
description hypothetical protein
nr
ID KDP23642.1
description hypothetical protein JCGZ_23475 [Jatropha curcas]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID A0A067JID2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23475 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57295: 172-455 , PASA_asmbl_57296: 815-1180 , PASA_asmbl_57298: 2161-2472
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007618_010 0.0 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
2 Hb_008175_030 0.1359421913 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]
3 Hb_000532_130 0.144322604 - - hypothetical protein [Anabaena sp. PCC 7108]
4 Hb_057079_020 0.1447584045 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000088_160 0.1473573593 - - PREDICTED: uncharacterized protein LOC105629775 [Jatropha curcas]
6 Hb_002739_060 0.1484787077 - - -
7 Hb_007253_040 0.1515180858 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]
8 Hb_000521_300 0.1551612326 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
9 Hb_000778_020 0.1601722847 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
10 Hb_003299_010 0.1618511857 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
11 Hb_000086_370 0.1626582825 - - Long-chain-alcohol oxidase FAO2 [Triticum urartu]
12 Hb_000189_120 0.1648784828 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like isoform X5 [Jatropha curcas]
13 Hb_000977_010 0.1672189916 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
14 Hb_001373_010 0.1672416772 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
15 Hb_006738_060 0.1692747206 - - ATP binding protein, putative [Ricinus communis]
16 Hb_002218_070 0.1698569021 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
17 Hb_001584_010 0.178037484 - - kelch repeat protein, putative [Ricinus communis]
18 Hb_060909_010 0.1793366061 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
19 Hb_004195_170 0.1806758435 - - ATP binding protein, putative [Ricinus communis]
20 Hb_164010_090 0.1814858119 - - cellulose synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007618_010 Hb_007618_010 Hb_008175_030 Hb_008175_030 Hb_007618_010--Hb_008175_030 Hb_000532_130 Hb_000532_130 Hb_007618_010--Hb_000532_130 Hb_057079_020 Hb_057079_020 Hb_007618_010--Hb_057079_020 Hb_000088_160 Hb_000088_160 Hb_007618_010--Hb_000088_160 Hb_002739_060 Hb_002739_060 Hb_007618_010--Hb_002739_060 Hb_007253_040 Hb_007253_040 Hb_007618_010--Hb_007253_040 Hb_000778_020 Hb_000778_020 Hb_008175_030--Hb_000778_020 Hb_008175_030--Hb_002739_060 Hb_005880_010 Hb_005880_010 Hb_008175_030--Hb_005880_010 Hb_001408_150 Hb_001408_150 Hb_008175_030--Hb_001408_150 Hb_008175_030--Hb_057079_020 Hb_008175_030--Hb_000532_130 Hb_000532_130--Hb_002739_060 Hb_000532_130--Hb_007253_040 Hb_000532_130--Hb_001408_150 Hb_002609_150 Hb_002609_150 Hb_000532_130--Hb_002609_150 Hb_060909_010 Hb_060909_010 Hb_000532_130--Hb_060909_010 Hb_057079_020--Hb_000778_020 Hb_001410_010 Hb_001410_010 Hb_057079_020--Hb_001410_010 Hb_013749_060 Hb_013749_060 Hb_057079_020--Hb_013749_060 Hb_011310_200 Hb_011310_200 Hb_057079_020--Hb_011310_200 Hb_010253_020 Hb_010253_020 Hb_057079_020--Hb_010253_020 Hb_000521_300 Hb_000521_300 Hb_000088_160--Hb_000521_300 Hb_133636_010 Hb_133636_010 Hb_000088_160--Hb_133636_010 Hb_002783_320 Hb_002783_320 Hb_000088_160--Hb_002783_320 Hb_001454_340 Hb_001454_340 Hb_000088_160--Hb_001454_340 Hb_164010_090 Hb_164010_090 Hb_000088_160--Hb_164010_090 Hb_002739_060--Hb_000778_020 Hb_002739_060--Hb_001408_150 Hb_002739_060--Hb_005880_010 Hb_002739_060--Hb_002609_150 Hb_007259_020 Hb_007259_020 Hb_007253_040--Hb_007259_020 Hb_007253_040--Hb_008175_030 Hb_007253_040--Hb_060909_010 Hb_008226_100 Hb_008226_100 Hb_007253_040--Hb_008226_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.200223 8.31136 0.545671 1.71891 0.4406 1.17393
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0746956 0.0587761 0.0559637 5.77307 1.31026

CAGE analysis