Hb_007259_020

Information

Type -
Description -
Location Contig7259: 52144-86977
Sequence    

Annotation

kegg
ID pmum:103324696
description uncharacterized LOC103324696
nr
ID XP_012092397.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
swissprot
ID Q9ZT07
description G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 OS=Arabidopsis thaliana GN=RKS1 PE=3 SV=3
trembl
ID B9SXC2
description B-Raf proto-oncogene serine/threonine-protein kinase, putative OS=Ricinus communis GN=RCOM_0782900 PE=4 SV=1
Gene Ontology
ID GO:0004713
description g-type lectin s-receptor-like serine threonine-protein kinase at1g11410

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55851: 53484-53616 , PASA_asmbl_55852: 54095-54568 , PASA_asmbl_55853: 67036-67474 , PASA_asmbl_55854: 67498-68653 , PASA_asmbl_55855: 68776-70648 , PASA_asmbl_55856: 71480-71685 , PASA_asmbl_55857: 74482-77515
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007259_020 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
2 Hb_007253_040 0.1260253199 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]
3 Hb_002475_130 0.1352688141 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 4 [Jatropha curcas]
4 Hb_000532_130 0.14398426 - - hypothetical protein [Anabaena sp. PCC 7108]
5 Hb_001310_100 0.1547487691 transcription factor TF Family: GNAT PREDICTED: probable N-acetyltransferase HLS1 [Jatropha curcas]
6 Hb_060909_010 0.1630064695 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
7 Hb_001248_110 0.1697378848 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
8 Hb_002471_020 0.1722433336 - - PREDICTED: 65-kDa microtubule-associated protein 6-like [Jatropha curcas]
9 Hb_042553_010 0.1758980064 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
10 Hb_000544_020 0.1764990858 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
11 Hb_000233_100 0.1799614784 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
12 Hb_003525_020 0.1817234433 - - conserved hypothetical protein [Ricinus communis]
13 Hb_162074_010 0.1864555051 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
14 Hb_002739_070 0.1875460602 - - hypothetical protein B456_002G169900 [Gossypium raimondii]
15 Hb_001921_010 0.1882893014 - - ATP-dependent RNA helicase, putative [Ricinus communis]
16 Hb_008226_100 0.1930659841 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
17 Hb_001408_150 0.1937379462 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
18 Hb_020178_050 0.1963226807 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
19 Hb_004976_040 0.1967219555 - - PREDICTED: protein HASTY 1 [Jatropha curcas]
20 Hb_089100_040 0.1978908244 - - PREDICTED: uncharacterized protein LOC105638961 [Jatropha curcas]

Gene co-expression network

sample Hb_007259_020 Hb_007259_020 Hb_007253_040 Hb_007253_040 Hb_007259_020--Hb_007253_040 Hb_002475_130 Hb_002475_130 Hb_007259_020--Hb_002475_130 Hb_000532_130 Hb_000532_130 Hb_007259_020--Hb_000532_130 Hb_001310_100 Hb_001310_100 Hb_007259_020--Hb_001310_100 Hb_060909_010 Hb_060909_010 Hb_007259_020--Hb_060909_010 Hb_001248_110 Hb_001248_110 Hb_007259_020--Hb_001248_110 Hb_007253_040--Hb_000532_130 Hb_008175_030 Hb_008175_030 Hb_007253_040--Hb_008175_030 Hb_007253_040--Hb_060909_010 Hb_008226_100 Hb_008226_100 Hb_007253_040--Hb_008226_100 Hb_007618_010 Hb_007618_010 Hb_007253_040--Hb_007618_010 Hb_001921_010 Hb_001921_010 Hb_002475_130--Hb_001921_010 Hb_002739_070 Hb_002739_070 Hb_002475_130--Hb_002739_070 Hb_002232_050 Hb_002232_050 Hb_002475_130--Hb_002232_050 Hb_002475_130--Hb_000532_130 Hb_000233_100 Hb_000233_100 Hb_002475_130--Hb_000233_100 Hb_002739_060 Hb_002739_060 Hb_000532_130--Hb_002739_060 Hb_000532_130--Hb_008175_030 Hb_001408_150 Hb_001408_150 Hb_000532_130--Hb_001408_150 Hb_002609_150 Hb_002609_150 Hb_000532_130--Hb_002609_150 Hb_000532_130--Hb_060909_010 Hb_001310_100--Hb_002475_130 Hb_001310_100--Hb_000233_100 Hb_001310_100--Hb_000532_130 Hb_001310_100--Hb_002232_050 Hb_006103_040 Hb_006103_040 Hb_001310_100--Hb_006103_040 Hb_060909_010--Hb_001408_150 Hb_000544_020 Hb_000544_020 Hb_060909_010--Hb_000544_020 Hb_060909_010--Hb_000233_100 Hb_004648_100 Hb_004648_100 Hb_060909_010--Hb_004648_100 Hb_060909_010--Hb_008226_100 Hb_004466_070 Hb_004466_070 Hb_001248_110--Hb_004466_070 Hb_001248_110--Hb_000544_020 Hb_000566_190 Hb_000566_190 Hb_001248_110--Hb_000566_190 Hb_001608_030 Hb_001608_030 Hb_001248_110--Hb_001608_030 Hb_042553_010 Hb_042553_010 Hb_001248_110--Hb_042553_010 Hb_158696_010 Hb_158696_010 Hb_001248_110--Hb_158696_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.627878 7.92285 1.02994 1.21295 0.742163 1.72107
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0122068 0.0128098 0.00619629 2.128 1.32144

CAGE analysis