Hb_001921_010

Information

Type -
Description -
Location Contig1921: 6538-12338
Sequence    

Annotation

kegg
ID rcu:RCOM_0050440
description ATP-dependent RNA helicase, putative
nr
ID XP_002532676.1
description ATP-dependent RNA helicase, putative [Ricinus communis]
swissprot
ID Q38953
description Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2
trembl
ID B9T357
description ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_0050440 PE=4 SV=1
Gene Ontology
ID GO:0005739
description probable pre-mrna-splicing factor atp-dependent rna helicase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19139: 6419-6548 , PASA_asmbl_19145: 11519-11771 , PASA_asmbl_19146: 11882-12238
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001921_010 0.0 - - ATP-dependent RNA helicase, putative [Ricinus communis]
2 Hb_010080_020 0.1229555058 - - PREDICTED: uncharacterized protein LOC105635249 [Jatropha curcas]
3 Hb_002475_130 0.1232673131 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 4 [Jatropha curcas]
4 Hb_002218_070 0.1347450074 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
5 Hb_008175_030 0.1381123296 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]
6 Hb_000819_010 0.1407205815 - - Receptor-like protein kinase 1, putative [Theobroma cacao]
7 Hb_000333_120 0.1452538605 - - PREDICTED: thiol protease aleurain-like [Jatropha curcas]
8 Hb_002739_070 0.1474982656 - - hypothetical protein B456_002G169900 [Gossypium raimondii]
9 Hb_000668_160 0.149068671 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
10 Hb_002518_270 0.1507645693 - - glycogen phosphorylase, putative [Ricinus communis]
11 Hb_001863_450 0.1509541125 - - cryptochrome 1.2 [Populus tremula]
12 Hb_012018_010 0.1514220681 - - hypothetical protein MIMGU_mgv1a0024251mg, partial [Erythranthe guttata]
13 Hb_004466_070 0.153087168 - - hypothetical protein RCOM_1447500 [Ricinus communis]
14 Hb_073119_010 0.1531194675 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
15 Hb_000532_130 0.1532712848 - - hypothetical protein [Anabaena sp. PCC 7108]
16 Hb_001608_030 0.1540093805 - - Protein NSP-INTERACTING KINASE 1 [Glycine soja]
17 Hb_002232_050 0.1550977749 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
18 Hb_001879_050 0.15518316 - - Disease resistance protein RFL1, putative [Ricinus communis]
19 Hb_017604_020 0.1564037963 - - hypothetical protein JCGZ_22673 [Jatropha curcas]
20 Hb_060909_010 0.1566742905 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]

Gene co-expression network

sample Hb_001921_010 Hb_001921_010 Hb_010080_020 Hb_010080_020 Hb_001921_010--Hb_010080_020 Hb_002475_130 Hb_002475_130 Hb_001921_010--Hb_002475_130 Hb_002218_070 Hb_002218_070 Hb_001921_010--Hb_002218_070 Hb_008175_030 Hb_008175_030 Hb_001921_010--Hb_008175_030 Hb_000819_010 Hb_000819_010 Hb_001921_010--Hb_000819_010 Hb_000333_120 Hb_000333_120 Hb_001921_010--Hb_000333_120 Hb_012018_010 Hb_012018_010 Hb_010080_020--Hb_012018_010 Hb_073119_010 Hb_073119_010 Hb_010080_020--Hb_073119_010 Hb_001608_030 Hb_001608_030 Hb_010080_020--Hb_001608_030 Hb_012702_010 Hb_012702_010 Hb_010080_020--Hb_012702_010 Hb_021596_070 Hb_021596_070 Hb_010080_020--Hb_021596_070 Hb_002739_070 Hb_002739_070 Hb_002475_130--Hb_002739_070 Hb_007259_020 Hb_007259_020 Hb_002475_130--Hb_007259_020 Hb_002232_050 Hb_002232_050 Hb_002475_130--Hb_002232_050 Hb_000532_130 Hb_000532_130 Hb_002475_130--Hb_000532_130 Hb_000233_100 Hb_000233_100 Hb_002475_130--Hb_000233_100 Hb_001410_010 Hb_001410_010 Hb_002218_070--Hb_001410_010 Hb_117840_010 Hb_117840_010 Hb_002218_070--Hb_117840_010 Hb_000236_110 Hb_000236_110 Hb_002218_070--Hb_000236_110 Hb_003106_210 Hb_003106_210 Hb_002218_070--Hb_003106_210 Hb_002600_010 Hb_002600_010 Hb_002218_070--Hb_002600_010 Hb_002218_070--Hb_008175_030 Hb_000778_020 Hb_000778_020 Hb_008175_030--Hb_000778_020 Hb_002739_060 Hb_002739_060 Hb_008175_030--Hb_002739_060 Hb_005880_010 Hb_005880_010 Hb_008175_030--Hb_005880_010 Hb_001408_150 Hb_001408_150 Hb_008175_030--Hb_001408_150 Hb_057079_020 Hb_057079_020 Hb_008175_030--Hb_057079_020 Hb_008175_030--Hb_000532_130 Hb_000668_160 Hb_000668_160 Hb_000819_010--Hb_000668_160 Hb_009803_030 Hb_009803_030 Hb_000819_010--Hb_009803_030 Hb_000280_110 Hb_000280_110 Hb_000819_010--Hb_000280_110 Hb_010921_060 Hb_010921_060 Hb_000819_010--Hb_010921_060 Hb_008040_060 Hb_008040_060 Hb_000819_010--Hb_008040_060 Hb_000522_130 Hb_000522_130 Hb_000819_010--Hb_000522_130 Hb_108055_010 Hb_108055_010 Hb_000333_120--Hb_108055_010 Hb_000705_130 Hb_000705_130 Hb_000333_120--Hb_000705_130 Hb_015882_020 Hb_015882_020 Hb_000333_120--Hb_015882_020 Hb_000465_380 Hb_000465_380 Hb_000333_120--Hb_000465_380 Hb_010962_030 Hb_010962_030 Hb_000333_120--Hb_010962_030 Hb_000333_120--Hb_010921_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.858282 40.5015 6.72245 6.75413 2.52046 1.81068
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.222493 0.15449 0.473574 14.498 8.84872

CAGE analysis