Hb_002600_010

Information

Type -
Description -
Location Contig2600: 16893-18661
Sequence    

Annotation

kegg
ID rcu:RCOM_0015290
description Allene oxide cyclase 4, chloroplast precursor, putative (EC:5.3.99.6)
nr
ID XP_002530384.1
description Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9LS01
description Allene oxide cyclase 3, chloroplastic OS=Arabidopsis thaliana GN=AOC3 PE=2 SV=1
trembl
ID B9SWL5
description Allene oxide cyclase 4, chloroplast, putative OS=Ricinus communis GN=RCOM_0015290 PE=4 SV=1
Gene Ontology
ID GO:0009507
description allene oxide cyclase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27081: 16863-18530
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002600_010 0.0 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
2 Hb_000280_110 0.0914662855 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
3 Hb_004306_140 0.1099825339 - - calcineurin-like phosphoesterase [Manihot esculenta]
4 Hb_002276_100 0.1101343073 - - PREDICTED: UDP-glycosyltransferase 89A2-like [Jatropha curcas]
5 Hb_009803_030 0.114006918 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
6 Hb_007894_030 0.1144639993 - - calcium-dependent protein kinase, putative [Ricinus communis]
7 Hb_000563_120 0.1154842234 - - hypothetical protein JCGZ_18936 [Jatropha curcas]
8 Hb_001369_070 0.1162834379 - - unnamed protein product [Vitis vinifera]
9 Hb_000668_160 0.117763527 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
10 Hb_038777_010 0.1195959163 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN2 isoform X1 [Populus euphratica]
11 Hb_000037_010 0.1259370018 - - PREDICTED: cation/H(+) antiporter 18-like [Jatropha curcas]
12 Hb_107543_010 0.1263945348 - - Cysteine-rich RLK 10, putative [Theobroma cacao]
13 Hb_002218_070 0.127170603 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
14 Hb_006316_030 0.128799284 - - aldehyde oxidase, putative [Ricinus communis]
15 Hb_046101_010 0.1296113926 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Jatropha curcas]
16 Hb_000819_010 0.1310480603 - - Receptor-like protein kinase 1, putative [Theobroma cacao]
17 Hb_114310_050 0.1354582572 - - Iron(III)-zinc(II) purple acid phosphatase precursor family protein [Populus trichocarpa]
18 Hb_000976_340 0.1367043288 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
19 Hb_084127_010 0.1379571095 - - UDP-glucosyltransferase, putative [Ricinus communis]
20 Hb_074312_020 0.1385363059 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_002600_010 Hb_002600_010 Hb_000280_110 Hb_000280_110 Hb_002600_010--Hb_000280_110 Hb_004306_140 Hb_004306_140 Hb_002600_010--Hb_004306_140 Hb_002276_100 Hb_002276_100 Hb_002600_010--Hb_002276_100 Hb_009803_030 Hb_009803_030 Hb_002600_010--Hb_009803_030 Hb_007894_030 Hb_007894_030 Hb_002600_010--Hb_007894_030 Hb_000563_120 Hb_000563_120 Hb_002600_010--Hb_000563_120 Hb_000280_110--Hb_002276_100 Hb_000819_010 Hb_000819_010 Hb_000280_110--Hb_000819_010 Hb_000280_110--Hb_009803_030 Hb_046101_010 Hb_046101_010 Hb_000280_110--Hb_046101_010 Hb_107543_010 Hb_107543_010 Hb_000280_110--Hb_107543_010 Hb_114310_050 Hb_114310_050 Hb_004306_140--Hb_114310_050 Hb_004306_140--Hb_007894_030 Hb_000589_240 Hb_000589_240 Hb_004306_140--Hb_000589_240 Hb_000614_190 Hb_000614_190 Hb_004306_140--Hb_000614_190 Hb_000477_110 Hb_000477_110 Hb_004306_140--Hb_000477_110 Hb_014361_020 Hb_014361_020 Hb_004306_140--Hb_014361_020 Hb_074312_020 Hb_074312_020 Hb_002276_100--Hb_074312_020 Hb_020285_010 Hb_020285_010 Hb_002276_100--Hb_020285_010 Hb_002276_100--Hb_046101_010 Hb_038777_010 Hb_038777_010 Hb_002276_100--Hb_038777_010 Hb_001369_070 Hb_001369_070 Hb_002276_100--Hb_001369_070 Hb_007420_010 Hb_007420_010 Hb_009803_030--Hb_007420_010 Hb_167272_010 Hb_167272_010 Hb_009803_030--Hb_167272_010 Hb_009803_030--Hb_000819_010 Hb_001515_030 Hb_001515_030 Hb_009803_030--Hb_001515_030 Hb_009803_030--Hb_046101_010 Hb_007894_030--Hb_001369_070 Hb_007894_030--Hb_020285_010 Hb_000497_100 Hb_000497_100 Hb_007894_030--Hb_000497_100 Hb_010417_100 Hb_010417_100 Hb_007894_030--Hb_010417_100 Hb_007894_030--Hb_038777_010 Hb_001636_010 Hb_001636_010 Hb_007894_030--Hb_001636_010 Hb_000563_120--Hb_114310_050 Hb_001971_020 Hb_001971_020 Hb_000563_120--Hb_001971_020 Hb_000649_280 Hb_000649_280 Hb_000563_120--Hb_000649_280 Hb_000377_160 Hb_000377_160 Hb_000563_120--Hb_000377_160 Hb_001085_230 Hb_001085_230 Hb_000563_120--Hb_001085_230 Hb_000563_120--Hb_009803_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.997486 141.289 28.0064 56.6294 0.551959 1.91746
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.42225 0.870162 4.10927 76.2701 49.1332

CAGE analysis