Hb_004306_140

Information

Type -
Description -
Location Contig4306: 112646-116694
Sequence    

Annotation

kegg
ID rcu:RCOM_1719520
description acid phosphatase, putative (EC:3.1.3.2)
nr
ID AGL44403.1
description calcineurin-like phosphoesterase [Manihot esculenta]
swissprot
ID Q9SFU3
description Purple acid phosphatase 15 OS=Arabidopsis thaliana GN=PAP15 PE=1 SV=1
trembl
ID V9NC15
description Purple acid phosphatase OS=Manihot esculenta GN=PAP15-2 PE=2 SV=1
Gene Ontology
ID GO:0003993
description purple acid phosphatase 15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42196: 113480-115262 , PASA_asmbl_42197: 115402-116612
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004306_140 0.0 - - calcineurin-like phosphoesterase [Manihot esculenta]
2 Hb_114310_050 0.0845413995 - - Iron(III)-zinc(II) purple acid phosphatase precursor family protein [Populus trichocarpa]
3 Hb_007894_030 0.0894638494 - - calcium-dependent protein kinase, putative [Ricinus communis]
4 Hb_000589_240 0.0993174835 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
5 Hb_000614_190 0.1013971166 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
6 Hb_000477_110 0.1024944814 transcription factor TF Family: GRAS PREDICTED: DELLA protein SLR1-like [Jatropha curcas]
7 Hb_014361_020 0.1027085123 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]
8 Hb_001123_170 0.1040262173 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005054_280 0.1075883522 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
10 Hb_023344_130 0.1077085113 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
11 Hb_003656_170 0.1091147417 - - PREDICTED: phenylalanine ammonia-lyase-like [Jatropha curcas]
12 Hb_002600_010 0.1099825339 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
13 Hb_002000_130 0.1119914729 - - PREDICTED: abscisic stress-ripening protein 2-like [Eucalyptus grandis]
14 Hb_007420_020 0.112436607 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
15 Hb_001515_030 0.114173649 - - UDP-glucosyltransferase, putative [Ricinus communis]
16 Hb_000472_020 0.1156379911 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
17 Hb_001369_070 0.1173634512 - - unnamed protein product [Vitis vinifera]
18 Hb_006269_010 0.1177479618 - - hypothetical protein JCGZ_21552 [Jatropha curcas]
19 Hb_005034_010 0.1184622374 - - alcohol dehydrogenase, putative [Ricinus communis]
20 Hb_001956_080 0.1196350656 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 14 [Jatropha curcas]

Gene co-expression network

sample Hb_004306_140 Hb_004306_140 Hb_114310_050 Hb_114310_050 Hb_004306_140--Hb_114310_050 Hb_007894_030 Hb_007894_030 Hb_004306_140--Hb_007894_030 Hb_000589_240 Hb_000589_240 Hb_004306_140--Hb_000589_240 Hb_000614_190 Hb_000614_190 Hb_004306_140--Hb_000614_190 Hb_000477_110 Hb_000477_110 Hb_004306_140--Hb_000477_110 Hb_014361_020 Hb_014361_020 Hb_004306_140--Hb_014361_020 Hb_007420_020 Hb_007420_020 Hb_114310_050--Hb_007420_020 Hb_005054_280 Hb_005054_280 Hb_114310_050--Hb_005054_280 Hb_114310_050--Hb_000614_190 Hb_007420_010 Hb_007420_010 Hb_114310_050--Hb_007420_010 Hb_001515_030 Hb_001515_030 Hb_114310_050--Hb_001515_030 Hb_001369_070 Hb_001369_070 Hb_007894_030--Hb_001369_070 Hb_020285_010 Hb_020285_010 Hb_007894_030--Hb_020285_010 Hb_000497_100 Hb_000497_100 Hb_007894_030--Hb_000497_100 Hb_010417_100 Hb_010417_100 Hb_007894_030--Hb_010417_100 Hb_038777_010 Hb_038777_010 Hb_007894_030--Hb_038777_010 Hb_001636_010 Hb_001636_010 Hb_007894_030--Hb_001636_010 Hb_012743_020 Hb_012743_020 Hb_000589_240--Hb_012743_020 Hb_005357_020 Hb_005357_020 Hb_000589_240--Hb_005357_020 Hb_001143_140 Hb_001143_140 Hb_000589_240--Hb_001143_140 Hb_000028_460 Hb_000028_460 Hb_000589_240--Hb_000028_460 Hb_000472_020 Hb_000472_020 Hb_000589_240--Hb_000472_020 Hb_000614_190--Hb_005054_280 Hb_000614_190--Hb_007420_020 Hb_026144_030 Hb_026144_030 Hb_000614_190--Hb_026144_030 Hb_005034_010 Hb_005034_010 Hb_000614_190--Hb_005034_010 Hb_001174_030 Hb_001174_030 Hb_000614_190--Hb_001174_030 Hb_006483_090 Hb_006483_090 Hb_000477_110--Hb_006483_090 Hb_000477_110--Hb_000472_020 Hb_006269_010 Hb_006269_010 Hb_000477_110--Hb_006269_010 Hb_001956_080 Hb_001956_080 Hb_000477_110--Hb_001956_080 Hb_001153_090 Hb_001153_090 Hb_000477_110--Hb_001153_090 Hb_000613_250 Hb_000613_250 Hb_000477_110--Hb_000613_250 Hb_004166_020 Hb_004166_020 Hb_014361_020--Hb_004166_020 Hb_000085_220 Hb_000085_220 Hb_014361_020--Hb_000085_220 Hb_167272_010 Hb_167272_010 Hb_014361_020--Hb_167272_010 Hb_014361_020--Hb_006269_010 Hb_174101_010 Hb_174101_010 Hb_014361_020--Hb_174101_010 Hb_014361_020--Hb_000497_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0703921 9.41855 3.73349 5.5243 0.0358547 0.0337045
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0641471 0.0504737 0.223618 5.03797 4.87804

CAGE analysis