Hb_007894_030

Information

Type -
Description -
Location Contig7894: 31158-37392
Sequence    

Annotation

kegg
ID rcu:RCOM_0082230
description calcium-dependent protein kinase, putative (EC:2.7.11.17)
nr
ID XP_002532559.1
description calcium-dependent protein kinase, putative [Ricinus communis]
swissprot
ID Q38868
description Calcium-dependent protein kinase 9 OS=Arabidopsis thaliana GN=CPK9 PE=1 SV=1
trembl
ID B9T2U0
description Calcium-dependent protein kinase, putative OS=Ricinus communis GN=RCOM_0082230 PE=4 SV=1
Gene Ontology
ID GO:0004683
description calcium-dependent protein kinase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58252: 30973-37436
cDNA
(Sanger)
(ID:Location)		 014_D13.ab1: 32068-36496

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007894_030 0.0 - - calcium-dependent protein kinase, putative [Ricinus communis]
2 Hb_001369_070 0.0675753643 - - unnamed protein product [Vitis vinifera]
3 Hb_020285_010 0.077865816 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3, partial [Pyrus x bretschneideri]
4 Hb_000497_100 0.0828079212 - - respiratory burst oxidase D [Manihot esculenta]
5 Hb_010417_100 0.0830583508 - - PREDICTED: respiratory burst oxidase homolog protein A [Jatropha curcas]
6 Hb_038777_010 0.0886567617 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN2 isoform X1 [Populus euphratica]
7 Hb_001636_010 0.0892112167 - - hypothetical protein JCGZ_01264 [Jatropha curcas]
8 Hb_004306_140 0.0894638494 - - calcineurin-like phosphoesterase [Manihot esculenta]
9 Hb_005357_020 0.0901923039 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000085_220 0.0939483113 - - conserved hypothetical protein [Ricinus communis]
11 Hb_046101_010 0.0961119942 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Jatropha curcas]
12 Hb_014361_020 0.097758001 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]
13 Hb_002276_100 0.1032114751 - - PREDICTED: UDP-glycosyltransferase 89A2-like [Jatropha curcas]
14 Hb_004544_090 0.1042117789 - - cytochrome P450, putative [Ricinus communis]
15 Hb_001123_170 0.1046082833 - - conserved hypothetical protein [Ricinus communis]
16 Hb_064985_010 0.1075895364 - - Leucine-rich repeat transmembrane protein kinase, putative [Theobroma cacao]
17 Hb_114310_050 0.1090334877 - - Iron(III)-zinc(II) purple acid phosphatase precursor family protein [Populus trichocarpa]
18 Hb_000028_460 0.1099698847 - - hypothetical protein POPTR_0015s05340g [Populus trichocarpa]
19 Hb_004166_020 0.1123735622 - - -
20 Hb_001377_130 0.1132169899 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_007894_030 Hb_007894_030 Hb_001369_070 Hb_001369_070 Hb_007894_030--Hb_001369_070 Hb_020285_010 Hb_020285_010 Hb_007894_030--Hb_020285_010 Hb_000497_100 Hb_000497_100 Hb_007894_030--Hb_000497_100 Hb_010417_100 Hb_010417_100 Hb_007894_030--Hb_010417_100 Hb_038777_010 Hb_038777_010 Hb_007894_030--Hb_038777_010 Hb_001636_010 Hb_001636_010 Hb_007894_030--Hb_001636_010 Hb_046101_010 Hb_046101_010 Hb_001369_070--Hb_046101_010 Hb_001369_070--Hb_000497_100 Hb_001369_070--Hb_020285_010 Hb_074312_020 Hb_074312_020 Hb_001369_070--Hb_074312_020 Hb_001369_070--Hb_038777_010 Hb_020285_010--Hb_000497_100 Hb_020285_010--Hb_046101_010 Hb_020285_010--Hb_038777_010 Hb_002276_100 Hb_002276_100 Hb_020285_010--Hb_002276_100 Hb_000028_460 Hb_000028_460 Hb_000497_100--Hb_000028_460 Hb_000497_100--Hb_038777_010 Hb_131662_010 Hb_131662_010 Hb_000497_100--Hb_131662_010 Hb_005357_020 Hb_005357_020 Hb_010417_100--Hb_005357_020 Hb_010417_100--Hb_001636_010 Hb_000840_050 Hb_000840_050 Hb_010417_100--Hb_000840_050 Hb_000085_220 Hb_000085_220 Hb_010417_100--Hb_000085_220 Hb_010417_100--Hb_000497_100 Hb_038777_010--Hb_005357_020 Hb_001862_060 Hb_001862_060 Hb_038777_010--Hb_001862_060 Hb_038777_010--Hb_000028_460 Hb_001636_010--Hb_020285_010 Hb_001421_010 Hb_001421_010 Hb_001636_010--Hb_001421_010 Hb_001636_010--Hb_038777_010 Hb_001894_040 Hb_001894_040 Hb_001636_010--Hb_001894_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.146859 53.4167 21.8931 30.1869 0.0450666 0.217053
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.404352 0.552598 0.445181 37.8353 19.0682

CAGE analysis