Hb_001862_060

Information

Type -
Description -
Location Contig1862: 67356-73441
Sequence    

Annotation

kegg
ID pop:POPTR_0007s10240g
description hypothetical protein
nr
ID XP_012079348.1
description PREDICTED: uncharacterized protein LOC105639802 isoform X1 [Jatropha curcas]
swissprot
ID Q92466
description DNA damage-binding protein 2 OS=Homo sapiens GN=DDB2 PE=1 SV=1
trembl
ID A0A067K709
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12492 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18280: 67842-68951 , PASA_asmbl_18281: 67879-68242 , PASA_asmbl_18282: 69892-70015 , PASA_asmbl_18283: 70109-70634 , PASA_asmbl_18284: 70894-71063 , PASA_asmbl_18285: 71929-72542
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001862_060 0.0 - - PREDICTED: uncharacterized protein LOC105639802 isoform X1 [Jatropha curcas]
2 Hb_074312_020 0.063605518 - - cytochrome P450, putative [Ricinus communis]
3 Hb_003439_020 0.0773146223 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1-like [Solanum lycopersicum]
4 Hb_038777_010 0.0867181944 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN2 isoform X1 [Populus euphratica]
5 Hb_134017_010 0.0876906799 - - kinase, putative [Ricinus communis]
6 Hb_009581_040 0.0895389575 - - hypothetical protein B456_011G052100 [Gossypium raimondii]
7 Hb_001894_040 0.0926125666 - - PREDICTED: carbonic anhydrase 2 isoform X1 [Jatropha curcas]
8 Hb_003430_020 0.0968078947 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
9 Hb_008226_120 0.0981689727 - - ATP binding protein, putative [Ricinus communis]
10 Hb_000255_020 0.1007832019 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
11 Hb_003376_200 0.1021842027 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
12 Hb_000579_180 0.1077030244 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]
13 Hb_046101_010 0.1081289978 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Jatropha curcas]
14 Hb_012807_060 0.1081339685 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_009581_050 0.1154343271 - - hypothetical protein CISIN_1g0025812mg, partial [Citrus sinensis]
16 Hb_002276_100 0.1162914709 - - PREDICTED: UDP-glycosyltransferase 89A2-like [Jatropha curcas]
17 Hb_006316_030 0.1164712855 - - aldehyde oxidase, putative [Ricinus communis]
18 Hb_020285_010 0.1177915473 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3, partial [Pyrus x bretschneideri]
19 Hb_001369_070 0.1209039476 - - unnamed protein product [Vitis vinifera]
20 Hb_130967_010 0.1231970254 - - UDP-glucosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001862_060 Hb_001862_060 Hb_074312_020 Hb_074312_020 Hb_001862_060--Hb_074312_020 Hb_003439_020 Hb_003439_020 Hb_001862_060--Hb_003439_020 Hb_038777_010 Hb_038777_010 Hb_001862_060--Hb_038777_010 Hb_134017_010 Hb_134017_010 Hb_001862_060--Hb_134017_010 Hb_009581_040 Hb_009581_040 Hb_001862_060--Hb_009581_040 Hb_001894_040 Hb_001894_040 Hb_001862_060--Hb_001894_040 Hb_074312_020--Hb_003439_020 Hb_046101_010 Hb_046101_010 Hb_074312_020--Hb_046101_010 Hb_002276_100 Hb_002276_100 Hb_074312_020--Hb_002276_100 Hb_074312_020--Hb_134017_010 Hb_001369_070 Hb_001369_070 Hb_074312_020--Hb_001369_070 Hb_003439_020--Hb_134017_010 Hb_000255_020 Hb_000255_020 Hb_003439_020--Hb_000255_020 Hb_003430_020 Hb_003430_020 Hb_003439_020--Hb_003430_020 Hb_084127_010 Hb_084127_010 Hb_003439_020--Hb_084127_010 Hb_020285_010 Hb_020285_010 Hb_038777_010--Hb_020285_010 Hb_005357_020 Hb_005357_020 Hb_038777_010--Hb_005357_020 Hb_000497_100 Hb_000497_100 Hb_038777_010--Hb_000497_100 Hb_007894_030 Hb_007894_030 Hb_038777_010--Hb_007894_030 Hb_000028_460 Hb_000028_460 Hb_038777_010--Hb_000028_460 Hb_003376_200 Hb_003376_200 Hb_134017_010--Hb_003376_200 Hb_003439_090 Hb_003439_090 Hb_134017_010--Hb_003439_090 Hb_130967_010 Hb_130967_010 Hb_134017_010--Hb_130967_010 Hb_134017_010--Hb_003430_020 Hb_009581_040--Hb_003430_020 Hb_008406_020 Hb_008406_020 Hb_009581_040--Hb_008406_020 Hb_009581_040--Hb_074312_020 Hb_009581_040--Hb_000255_020 Hb_009581_040--Hb_002276_100 Hb_000085_230 Hb_000085_230 Hb_001894_040--Hb_000085_230 Hb_008226_120 Hb_008226_120 Hb_001894_040--Hb_008226_120 Hb_000579_180 Hb_000579_180 Hb_001894_040--Hb_000579_180 Hb_001894_040--Hb_046101_010 Hb_001636_010 Hb_001636_010 Hb_001894_040--Hb_001636_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00908004 6.4329 1.03843 2.88229 0.0137294 0.0398258
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0130958 0 5.9521 1.81158

CAGE analysis