Hb_003439_020

Information

Type -
Description -
Location Contig3439: 11330-13324
Sequence    

Annotation

kegg
ID sly:101257591
description L-type lectin-domain containing receptor kinase IV.1-like
nr
ID XP_004246354.1
description PREDICTED: L-type lectin-domain containing receptor kinase IV.1-like [Solanum lycopersicum]
swissprot
ID Q9FJI4
description Putative L-type lectin-domain containing receptor kinase I.11 OS=Arabidopsis thaliana GN=LECRK111 PE=3 SV=1
trembl
ID K4CRM4
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc09g011990.1 PE=3 SV=1
Gene Ontology
ID GO:0004672
description l-type lectin-domain containing receptor kinase -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003439_020 0.0 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1-like [Solanum lycopersicum]
2 Hb_074312_020 0.0632941638 - - cytochrome P450, putative [Ricinus communis]
3 Hb_134017_010 0.0733178704 - - kinase, putative [Ricinus communis]
4 Hb_001862_060 0.0773146223 - - PREDICTED: uncharacterized protein LOC105639802 isoform X1 [Jatropha curcas]
5 Hb_000255_020 0.0907624763 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
6 Hb_003430_020 0.0936165809 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
7 Hb_084127_010 0.0969658804 - - UDP-glucosyltransferase, putative [Ricinus communis]
8 Hb_009581_040 0.1025692045 - - hypothetical protein B456_011G052100 [Gossypium raimondii]
9 Hb_126466_010 0.1068138777 - - alcohol dehydrogenase, putative [Ricinus communis]
10 Hb_005183_200 0.1099677111 - - EG964 [Manihot glaziovii]
11 Hb_003439_090 0.1109278058 - - kinase, putative [Ricinus communis]
12 Hb_003376_200 0.1134944601 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
13 Hb_006615_190 0.1148966423 - - UDP-glycosyltransferase 1 [Linum usitatissimum]
14 Hb_130967_010 0.1204180428 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_002276_100 0.1208735531 - - PREDICTED: UDP-glycosyltransferase 89A2-like [Jatropha curcas]
16 Hb_000856_240 0.1210561325 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
17 Hb_001823_070 0.1213250156 - - PREDICTED: uncharacterized protein LOC105637371 [Jatropha curcas]
18 Hb_038777_010 0.1265335449 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN2 isoform X1 [Populus euphratica]
19 Hb_007237_090 0.1267532636 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000907_120 0.1275191718 transcription factor TF Family: G2-like PREDICTED: transcription repressor KAN1-like [Populus euphratica]

Gene co-expression network

sample Hb_003439_020 Hb_003439_020 Hb_074312_020 Hb_074312_020 Hb_003439_020--Hb_074312_020 Hb_134017_010 Hb_134017_010 Hb_003439_020--Hb_134017_010 Hb_001862_060 Hb_001862_060 Hb_003439_020--Hb_001862_060 Hb_000255_020 Hb_000255_020 Hb_003439_020--Hb_000255_020 Hb_003430_020 Hb_003430_020 Hb_003439_020--Hb_003430_020 Hb_084127_010 Hb_084127_010 Hb_003439_020--Hb_084127_010 Hb_074312_020--Hb_001862_060 Hb_046101_010 Hb_046101_010 Hb_074312_020--Hb_046101_010 Hb_002276_100 Hb_002276_100 Hb_074312_020--Hb_002276_100 Hb_074312_020--Hb_134017_010 Hb_001369_070 Hb_001369_070 Hb_074312_020--Hb_001369_070 Hb_003376_200 Hb_003376_200 Hb_134017_010--Hb_003376_200 Hb_003439_090 Hb_003439_090 Hb_134017_010--Hb_003439_090 Hb_130967_010 Hb_130967_010 Hb_134017_010--Hb_130967_010 Hb_134017_010--Hb_003430_020 Hb_038777_010 Hb_038777_010 Hb_001862_060--Hb_038777_010 Hb_001862_060--Hb_134017_010 Hb_009581_040 Hb_009581_040 Hb_001862_060--Hb_009581_040 Hb_001894_040 Hb_001894_040 Hb_001862_060--Hb_001894_040 Hb_000856_240 Hb_000856_240 Hb_000255_020--Hb_000856_240 Hb_001838_010 Hb_001838_010 Hb_000255_020--Hb_001838_010 Hb_000255_020--Hb_134017_010 Hb_000255_020--Hb_074312_020 Hb_000255_020--Hb_009581_040 Hb_003430_020--Hb_009581_040 Hb_009581_050 Hb_009581_050 Hb_003430_020--Hb_009581_050 Hb_003430_020--Hb_003439_090 Hb_005183_200 Hb_005183_200 Hb_003430_020--Hb_005183_200 Hb_012807_060 Hb_012807_060 Hb_003430_020--Hb_012807_060 Hb_007237_090 Hb_007237_090 Hb_084127_010--Hb_007237_090 Hb_000579_220 Hb_000579_220 Hb_084127_010--Hb_000579_220 Hb_006615_190 Hb_006615_190 Hb_084127_010--Hb_006615_190 Hb_000521_210 Hb_000521_210 Hb_084127_010--Hb_000521_210 Hb_084127_010--Hb_074312_020 Hb_020648_020 Hb_020648_020 Hb_084127_010--Hb_020648_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.04463 0.114827 0.496184 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.750957 0.225777

CAGE analysis