Hb_006269_010

Information

Type -
Description -
Location Contig6269: 7792-10929
Sequence    

Annotation

kegg
ID rcu:RCOM_1014690
description ubiquitin-protein ligase, putative
nr
ID KDP21081.1
description hypothetical protein JCGZ_21552 [Jatropha curcas]
swissprot
ID Q9CAG5
description U-box domain-containing protein 7 OS=Arabidopsis thaliana GN=PUB7 PE=2 SV=1
trembl
ID A0A067JB98
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21552 PE=4 SV=1
Gene Ontology
ID GO:0005515
description u-box domain-containing protein 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006269_010 0.0 - - hypothetical protein JCGZ_21552 [Jatropha curcas]
2 Hb_001153_090 0.0735080648 - - PREDICTED: protein FAM63A [Jatropha curcas]
3 Hb_001174_030 0.0845355901 - - unnamed protein product [Vitis vinifera]
4 Hb_000477_110 0.0881195711 transcription factor TF Family: GRAS PREDICTED: DELLA protein SLR1-like [Jatropha curcas]
5 Hb_000085_220 0.0910805793 - - conserved hypothetical protein [Ricinus communis]
6 Hb_014361_020 0.092469097 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]
7 Hb_004166_020 0.0932679602 - - -
8 Hb_167272_010 0.0963361458 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
9 Hb_000092_030 0.0972933271 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
10 Hb_001544_070 0.1000602708 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
11 Hb_003387_080 0.1008009142 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
12 Hb_007747_100 0.1011089553 - - PREDICTED: probable F-box protein At1g60180 [Jatropha curcas]
13 Hb_006483_090 0.1016549195 - - PREDICTED: uncharacterized protein LOC105639979 [Jatropha curcas]
14 Hb_001956_080 0.1030775121 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 14 [Jatropha curcas]
15 Hb_114310_050 0.1031556855 - - Iron(III)-zinc(II) purple acid phosphatase precursor family protein [Populus trichocarpa]
16 Hb_003562_040 0.1043306286 - - PREDICTED: septum-promoting GTP-binding protein 1-like [Jatropha curcas]
17 Hb_174101_010 0.1047750629 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
18 Hb_005569_030 0.1055618359 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 isoform X1 [Jatropha curcas]
19 Hb_002849_120 0.106019606 - - ferric reductase oxidase [Manihot esculenta]
20 Hb_007420_020 0.1078174131 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]

Gene co-expression network

sample Hb_006269_010 Hb_006269_010 Hb_001153_090 Hb_001153_090 Hb_006269_010--Hb_001153_090 Hb_001174_030 Hb_001174_030 Hb_006269_010--Hb_001174_030 Hb_000477_110 Hb_000477_110 Hb_006269_010--Hb_000477_110 Hb_000085_220 Hb_000085_220 Hb_006269_010--Hb_000085_220 Hb_014361_020 Hb_014361_020 Hb_006269_010--Hb_014361_020 Hb_004166_020 Hb_004166_020 Hb_006269_010--Hb_004166_020 Hb_002849_120 Hb_002849_120 Hb_001153_090--Hb_002849_120 Hb_007747_100 Hb_007747_100 Hb_001153_090--Hb_007747_100 Hb_023344_130 Hb_023344_130 Hb_001153_090--Hb_023344_130 Hb_001160_020 Hb_001160_020 Hb_001153_090--Hb_001160_020 Hb_003077_140 Hb_003077_140 Hb_001153_090--Hb_003077_140 Hb_001544_070 Hb_001544_070 Hb_001174_030--Hb_001544_070 Hb_001706_020 Hb_001706_020 Hb_001174_030--Hb_001706_020 Hb_005034_010 Hb_005034_010 Hb_001174_030--Hb_005034_010 Hb_174101_010 Hb_174101_010 Hb_001174_030--Hb_174101_010 Hb_000472_020 Hb_000472_020 Hb_001174_030--Hb_000472_020 Hb_003562_040 Hb_003562_040 Hb_001174_030--Hb_003562_040 Hb_006483_090 Hb_006483_090 Hb_000477_110--Hb_006483_090 Hb_000477_110--Hb_000472_020 Hb_001956_080 Hb_001956_080 Hb_000477_110--Hb_001956_080 Hb_000477_110--Hb_001153_090 Hb_000613_250 Hb_000613_250 Hb_000477_110--Hb_000613_250 Hb_000085_220--Hb_004166_020 Hb_000085_220--Hb_014361_020 Hb_000092_030 Hb_000092_030 Hb_000085_220--Hb_000092_030 Hb_167272_010 Hb_167272_010 Hb_000085_220--Hb_167272_010 Hb_031862_020 Hb_031862_020 Hb_000085_220--Hb_031862_020 Hb_014361_020--Hb_004166_020 Hb_014361_020--Hb_167272_010 Hb_014361_020--Hb_174101_010 Hb_000497_100 Hb_000497_100 Hb_014361_020--Hb_000497_100 Hb_004166_020--Hb_174101_010 Hb_004166_020--Hb_000092_030 Hb_004166_020--Hb_000497_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.52556 3.51047 3.29273 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.78587 3.40501

CAGE analysis