Hb_001956_080

Information

Type transcription factor
Description TF Family: GRAS
Location Contig1956: 56848-59223
Sequence    

Annotation

kegg
ID rcu:RCOM_0300740
description transcription factor, putative
nr
ID XP_012067010.1
description PREDICTED: scarecrow-like protein 14 [Jatropha curcas]
swissprot
ID Q9XE58
description Scarecrow-like protein 14 OS=Arabidopsis thaliana GN=SCL14 PE=2 SV=2
trembl
ID A0A067L1C8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02981 PE=4 SV=1
Gene Ontology
ID GO:0006351
description scarecrow-like protein 14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19582: 56228-59476
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001956_080 0.0 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 14 [Jatropha curcas]
2 Hb_005488_030 0.0882680922 - - F3F9.11 [Arabidopsis lyrata subsp. lyrata]
3 Hb_000477_110 0.0899528247 transcription factor TF Family: GRAS PREDICTED: DELLA protein SLR1-like [Jatropha curcas]
4 Hb_001153_090 0.0913664183 - - PREDICTED: protein FAM63A [Jatropha curcas]
5 Hb_004421_010 0.0920592859 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
6 Hb_023344_130 0.098584874 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
7 Hb_007747_100 0.1024503912 - - PREDICTED: probable F-box protein At1g60180 [Jatropha curcas]
8 Hb_006269_010 0.1030775121 - - hypothetical protein JCGZ_21552 [Jatropha curcas]
9 Hb_001544_070 0.1054915046 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
10 Hb_000472_020 0.1107880634 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
11 Hb_001174_030 0.1109698767 - - unnamed protein product [Vitis vinifera]
12 Hb_001706_020 0.1128871809 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
13 Hb_000092_030 0.1175019742 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
14 Hb_030982_050 0.1176935995 - - PREDICTED: gamma-glutamyl hydrolase 2-like [Jatropha curcas]
15 Hb_000398_140 0.1187751943 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
16 Hb_004306_140 0.1196350656 - - calcineurin-like phosphoesterase [Manihot esculenta]
17 Hb_000215_290 0.1199520036 transcription factor TF Family: NAC PREDICTED: protein BEARSKIN2 isoform X2 [Jatropha curcas]
18 Hb_000613_250 0.1218432112 - - PREDICTED: nudix hydrolase 2-like [Jatropha curcas]
19 Hb_001160_020 0.1219370078 transcription factor TF Family: NF-YA Nuclear transcription factor Y subunit A-3, putative [Ricinus communis]
20 Hb_004122_060 0.1230571505 - - PREDICTED: uncharacterized acetyltransferase At3g50280-like [Jatropha curcas]

Gene co-expression network

sample Hb_001956_080 Hb_001956_080 Hb_005488_030 Hb_005488_030 Hb_001956_080--Hb_005488_030 Hb_000477_110 Hb_000477_110 Hb_001956_080--Hb_000477_110 Hb_001153_090 Hb_001153_090 Hb_001956_080--Hb_001153_090 Hb_004421_010 Hb_004421_010 Hb_001956_080--Hb_004421_010 Hb_023344_130 Hb_023344_130 Hb_001956_080--Hb_023344_130 Hb_007747_100 Hb_007747_100 Hb_001956_080--Hb_007747_100 Hb_001706_020 Hb_001706_020 Hb_005488_030--Hb_001706_020 Hb_005488_030--Hb_007747_100 Hb_000215_290 Hb_000215_290 Hb_005488_030--Hb_000215_290 Hb_005488_030--Hb_001153_090 Hb_005488_030--Hb_023344_130 Hb_006483_090 Hb_006483_090 Hb_000477_110--Hb_006483_090 Hb_000472_020 Hb_000472_020 Hb_000477_110--Hb_000472_020 Hb_006269_010 Hb_006269_010 Hb_000477_110--Hb_006269_010 Hb_000477_110--Hb_001153_090 Hb_000613_250 Hb_000613_250 Hb_000477_110--Hb_000613_250 Hb_001153_090--Hb_006269_010 Hb_002849_120 Hb_002849_120 Hb_001153_090--Hb_002849_120 Hb_001153_090--Hb_007747_100 Hb_001153_090--Hb_023344_130 Hb_001160_020 Hb_001160_020 Hb_001153_090--Hb_001160_020 Hb_003077_140 Hb_003077_140 Hb_001153_090--Hb_003077_140 Hb_000398_140 Hb_000398_140 Hb_004421_010--Hb_000398_140 Hb_001776_100 Hb_001776_100 Hb_004421_010--Hb_001776_100 Hb_004421_010--Hb_000613_250 Hb_012743_020 Hb_012743_020 Hb_004421_010--Hb_012743_020 Hb_004421_010--Hb_000472_020 Hb_006788_100 Hb_006788_100 Hb_023344_130--Hb_006788_100 Hb_023344_130--Hb_001160_020 Hb_002078_240 Hb_002078_240 Hb_023344_130--Hb_002078_240 Hb_000501_040 Hb_000501_040 Hb_023344_130--Hb_000501_040 Hb_007747_100--Hb_001160_020 Hb_007747_100--Hb_006269_010 Hb_007747_100--Hb_002849_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00822552 8.61068 6.92917 6.98727 0.0230973 0.0376954
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0560217 0.337963 0.0839456 5.919 7.14406

CAGE analysis