Hb_006788_100

Information

Type -
Description -
Location Contig6788: 48700-51248
Sequence    

Annotation

kegg
ID rcu:RCOM_0991190
description RNA binding protein, putative
nr
ID XP_012092139.1
description PREDICTED: uncharacterized protein LOC105649919 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JC50
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21858 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53656: 49777-50435
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006788_100 0.0 - - PREDICTED: uncharacterized protein LOC105649919 isoform X1 [Jatropha curcas]
2 Hb_001819_010 0.0905876044 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
3 Hb_023344_130 0.0906994363 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
4 Hb_032717_010 0.0936424342 - - unnamed protein product [Vitis vinifera]
5 Hb_005276_220 0.0989730233 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
6 Hb_000840_050 0.101072042 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Vitis vinifera]
7 Hb_010417_100 0.1085677193 - - PREDICTED: respiratory burst oxidase homolog protein A [Jatropha curcas]
8 Hb_000108_090 0.1094533044 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
9 Hb_009659_040 0.1098565969 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER [Populus euphratica]
10 Hb_000163_250 0.1113850629 - - unnamed protein product [Vitis vinifera]
11 Hb_004122_060 0.1146888022 - - PREDICTED: uncharacterized acetyltransferase At3g50280-like [Jatropha curcas]
12 Hb_001634_080 0.1170663672 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
13 Hb_000501_040 0.1177330663 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_000085_220 0.1192406688 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000203_080 0.1192783539 - - Xylem bark cysteine peptidase 3 isoform 1 [Theobroma cacao]
16 Hb_039022_020 0.1193360569 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
17 Hb_007420_020 0.1204816764 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
18 Hb_000096_210 0.1217073831 - - PREDICTED: probable carboxylesterase 7 [Jatropha curcas]
19 Hb_001636_010 0.1221678312 - - hypothetical protein JCGZ_01264 [Jatropha curcas]
20 Hb_170878_050 0.1222125916 - - retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_006788_100 Hb_006788_100 Hb_001819_010 Hb_001819_010 Hb_006788_100--Hb_001819_010 Hb_023344_130 Hb_023344_130 Hb_006788_100--Hb_023344_130 Hb_032717_010 Hb_032717_010 Hb_006788_100--Hb_032717_010 Hb_005276_220 Hb_005276_220 Hb_006788_100--Hb_005276_220 Hb_000840_050 Hb_000840_050 Hb_006788_100--Hb_000840_050 Hb_010417_100 Hb_010417_100 Hb_006788_100--Hb_010417_100 Hb_123560_050 Hb_123560_050 Hb_001819_010--Hb_123560_050 Hb_170878_050 Hb_170878_050 Hb_001819_010--Hb_170878_050 Hb_029866_110 Hb_029866_110 Hb_001819_010--Hb_029866_110 Hb_000191_100 Hb_000191_100 Hb_001819_010--Hb_000191_100 Hb_009659_040 Hb_009659_040 Hb_001819_010--Hb_009659_040 Hb_001153_090 Hb_001153_090 Hb_023344_130--Hb_001153_090 Hb_001160_020 Hb_001160_020 Hb_023344_130--Hb_001160_020 Hb_002078_240 Hb_002078_240 Hb_023344_130--Hb_002078_240 Hb_001956_080 Hb_001956_080 Hb_023344_130--Hb_001956_080 Hb_000501_040 Hb_000501_040 Hb_023344_130--Hb_000501_040 Hb_000417_280 Hb_000417_280 Hb_032717_010--Hb_000417_280 Hb_005523_050 Hb_005523_050 Hb_032717_010--Hb_005523_050 Hb_001008_110 Hb_001008_110 Hb_032717_010--Hb_001008_110 Hb_001268_300 Hb_001268_300 Hb_032717_010--Hb_001268_300 Hb_032717_010--Hb_001819_010 Hb_011472_020 Hb_011472_020 Hb_005276_220--Hb_011472_020 Hb_000403_110 Hb_000403_110 Hb_005276_220--Hb_000403_110 Hb_001318_120 Hb_001318_120 Hb_005276_220--Hb_001318_120 Hb_005542_040 Hb_005542_040 Hb_005276_220--Hb_005542_040 Hb_175758_010 Hb_175758_010 Hb_005276_220--Hb_175758_010 Hb_010519_020 Hb_010519_020 Hb_005276_220--Hb_010519_020 Hb_138606_020 Hb_138606_020 Hb_000840_050--Hb_138606_020 Hb_000840_050--Hb_175758_010 Hb_000203_080 Hb_000203_080 Hb_000840_050--Hb_000203_080 Hb_001329_110 Hb_001329_110 Hb_000840_050--Hb_001329_110 Hb_000840_050--Hb_009659_040 Hb_000840_050--Hb_010417_100 Hb_005357_020 Hb_005357_020 Hb_010417_100--Hb_005357_020 Hb_007894_030 Hb_007894_030 Hb_010417_100--Hb_007894_030 Hb_001636_010 Hb_001636_010 Hb_010417_100--Hb_001636_010 Hb_000085_220 Hb_000085_220 Hb_010417_100--Hb_000085_220 Hb_000497_100 Hb_000497_100 Hb_010417_100--Hb_000497_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.141808 7.81091 5.52475 4.71775 0 0.113586
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0201838 0.0158818 0 9.55118 5.51997

CAGE analysis