Hb_009659_040

Information

Type transcription factor
Description TF Family: C2H2
Location Contig9659: 20632-23412
Sequence    

Annotation

kegg
ID rcu:RCOM_0311620
description nucleic acid binding protein, putative
nr
ID XP_011000809.1
description PREDICTED: zinc finger protein NUTCRACKER [Populus euphratica]
swissprot
ID Q8H1F5
description Protein indeterminate-domain 7 OS=Arabidopsis thaliana GN=IDD7 PE=2 SV=1
trembl
ID A0A067KX53
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24760 PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein nutcracker

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63892: 20669-21282 , PASA_asmbl_63893: 21352-23339
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009659_040 0.0 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER [Populus euphratica]
2 Hb_000917_120 0.0706119293 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001660_050 0.0768426435 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Eucalyptus grandis]
4 Hb_138606_020 0.085868984 - - Nitrate transporter2.5 [Theobroma cacao]
5 Hb_170878_050 0.0928026097 - - retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
6 Hb_000840_050 0.0944048937 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Vitis vinifera]
7 Hb_029866_110 0.0957262785 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 10-like [Jatropha curcas]
8 Hb_001819_010 0.0991019184 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
9 Hb_002622_010 0.1015513646 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
10 Hb_029576_080 0.1044359969 - - Aspartic proteinase precursor, putative [Ricinus communis]
11 Hb_006120_030 0.1061798889 - - -
12 Hb_175758_010 0.1079235809 - - PREDICTED: aspartic proteinase A1-like isoform X2 [Jatropha curcas]
13 Hb_005276_220 0.1092840633 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
14 Hb_000597_080 0.1094182742 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
15 Hb_000203_080 0.1097275452 - - Xylem bark cysteine peptidase 3 isoform 1 [Theobroma cacao]
16 Hb_006788_100 0.1098565969 - - PREDICTED: uncharacterized protein LOC105649919 isoform X1 [Jatropha curcas]
17 Hb_123560_050 0.1108365132 - - PREDICTED: probable receptor-like protein kinase At5g24010 [Jatropha curcas]
18 Hb_000011_120 0.1109439385 - - PREDICTED: ATPase 10, plasma membrane-type-like [Populus euphratica]
19 Hb_003767_010 0.1218546693 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
20 Hb_008783_020 0.1222760098 - - hypothetical protein JCGZ_21284 [Jatropha curcas]

Gene co-expression network

sample Hb_009659_040 Hb_009659_040 Hb_000917_120 Hb_000917_120 Hb_009659_040--Hb_000917_120 Hb_001660_050 Hb_001660_050 Hb_009659_040--Hb_001660_050 Hb_138606_020 Hb_138606_020 Hb_009659_040--Hb_138606_020 Hb_170878_050 Hb_170878_050 Hb_009659_040--Hb_170878_050 Hb_000840_050 Hb_000840_050 Hb_009659_040--Hb_000840_050 Hb_029866_110 Hb_029866_110 Hb_009659_040--Hb_029866_110 Hb_006120_030 Hb_006120_030 Hb_000917_120--Hb_006120_030 Hb_029576_080 Hb_029576_080 Hb_000917_120--Hb_029576_080 Hb_000597_080 Hb_000597_080 Hb_000917_120--Hb_000597_080 Hb_000011_120 Hb_000011_120 Hb_000917_120--Hb_000011_120 Hb_000917_120--Hb_001660_050 Hb_001660_050--Hb_170878_050 Hb_002622_010 Hb_002622_010 Hb_001660_050--Hb_002622_010 Hb_001660_050--Hb_029866_110 Hb_001660_050--Hb_029576_080 Hb_029260_010 Hb_029260_010 Hb_138606_020--Hb_029260_010 Hb_138606_020--Hb_000840_050 Hb_005357_020 Hb_005357_020 Hb_138606_020--Hb_005357_020 Hb_000347_420 Hb_000347_420 Hb_138606_020--Hb_000347_420 Hb_012743_020 Hb_012743_020 Hb_138606_020--Hb_012743_020 Hb_170878_050--Hb_029866_110 Hb_016637_020 Hb_016637_020 Hb_170878_050--Hb_016637_020 Hb_001819_010 Hb_001819_010 Hb_170878_050--Hb_001819_010 Hb_001634_080 Hb_001634_080 Hb_170878_050--Hb_001634_080 Hb_175758_010 Hb_175758_010 Hb_000840_050--Hb_175758_010 Hb_000203_080 Hb_000203_080 Hb_000840_050--Hb_000203_080 Hb_001329_110 Hb_001329_110 Hb_000840_050--Hb_001329_110 Hb_010417_100 Hb_010417_100 Hb_000840_050--Hb_010417_100 Hb_123560_050 Hb_123560_050 Hb_029866_110--Hb_123560_050 Hb_029866_110--Hb_016637_020 Hb_029866_110--Hb_001819_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 7.8222 3.94032 5.48384 0.0184465 0.0166606
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0432649 0 0 12.8348 7.52647

CAGE analysis