Hb_002622_010

Information

Type -
Description -
Location Contig2622: 13546-17621
Sequence    

Annotation

kegg
ID rcu:RCOM_0592550
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_012091038.1
description PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
swissprot
ID C0LGT6
description LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1
trembl
ID A0A067LJI6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01310 PE=4 SV=1
Gene Ontology
ID GO:0016301
description receptor-like protein kinase at3g47110

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002622_010 0.0 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
2 Hb_001660_050 0.0712231167 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Eucalyptus grandis]
3 Hb_001607_070 0.0912729193 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
4 Hb_004943_010 0.1005575981 - - cationic amino acid transporter, putative [Ricinus communis]
5 Hb_009659_040 0.1015513646 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER [Populus euphratica]
6 Hb_000203_080 0.1035810909 - - Xylem bark cysteine peptidase 3 isoform 1 [Theobroma cacao]
7 Hb_029576_080 0.1127432155 - - Aspartic proteinase precursor, putative [Ricinus communis]
8 Hb_000258_210 0.1138548687 - - prenyl-dependent CAAX protease, putative [Ricinus communis]
9 Hb_001109_130 0.1162452988 - - PREDICTED: coiled-coil domain-containing protein 136 isoform X1 [Jatropha curcas]
10 Hb_000917_120 0.1173492802 - - conserved hypothetical protein [Ricinus communis]
11 Hb_029866_110 0.124227021 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 10-like [Jatropha curcas]
12 Hb_004010_090 0.124503689 - - ATP binding protein, putative [Ricinus communis]
13 Hb_010839_010 0.1246758587 - - receptor-kinase, putative [Ricinus communis]
14 Hb_003085_080 0.1302065221 - - nucleic acid binding protein, putative [Ricinus communis]
15 Hb_000597_080 0.1316721918 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
16 Hb_138606_020 0.1323752774 - - Nitrate transporter2.5 [Theobroma cacao]
17 Hb_000112_050 0.1326082023 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
18 Hb_170878_050 0.1331858857 - - retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
19 Hb_135554_010 0.1335887832 - - Insulin-degrading enzyme, putative [Ricinus communis]
20 Hb_000840_050 0.1339699376 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Vitis vinifera]

Gene co-expression network

sample Hb_002622_010 Hb_002622_010 Hb_001660_050 Hb_001660_050 Hb_002622_010--Hb_001660_050 Hb_001607_070 Hb_001607_070 Hb_002622_010--Hb_001607_070 Hb_004943_010 Hb_004943_010 Hb_002622_010--Hb_004943_010 Hb_009659_040 Hb_009659_040 Hb_002622_010--Hb_009659_040 Hb_000203_080 Hb_000203_080 Hb_002622_010--Hb_000203_080 Hb_029576_080 Hb_029576_080 Hb_002622_010--Hb_029576_080 Hb_170878_050 Hb_170878_050 Hb_001660_050--Hb_170878_050 Hb_001660_050--Hb_009659_040 Hb_029866_110 Hb_029866_110 Hb_001660_050--Hb_029866_110 Hb_001660_050--Hb_029576_080 Hb_000917_120 Hb_000917_120 Hb_001660_050--Hb_000917_120 Hb_170878_060 Hb_170878_060 Hb_001607_070--Hb_170878_060 Hb_000597_080 Hb_000597_080 Hb_001607_070--Hb_000597_080 Hb_000120_880 Hb_000120_880 Hb_001607_070--Hb_000120_880 Hb_002308_060 Hb_002308_060 Hb_001607_070--Hb_002308_060 Hb_001778_040 Hb_001778_040 Hb_001607_070--Hb_001778_040 Hb_168319_060 Hb_168319_060 Hb_004943_010--Hb_168319_060 Hb_000836_260 Hb_000836_260 Hb_004943_010--Hb_000836_260 Hb_007850_110 Hb_007850_110 Hb_004943_010--Hb_007850_110 Hb_000258_210 Hb_000258_210 Hb_004943_010--Hb_000258_210 Hb_001109_130 Hb_001109_130 Hb_004943_010--Hb_001109_130 Hb_009659_040--Hb_000917_120 Hb_138606_020 Hb_138606_020 Hb_009659_040--Hb_138606_020 Hb_009659_040--Hb_170878_050 Hb_000840_050 Hb_000840_050 Hb_009659_040--Hb_000840_050 Hb_009659_040--Hb_029866_110 Hb_000203_080--Hb_000840_050 Hb_001114_120 Hb_001114_120 Hb_000203_080--Hb_001114_120 Hb_003842_010 Hb_003842_010 Hb_000203_080--Hb_003842_010 Hb_001329_110 Hb_001329_110 Hb_000203_080--Hb_001329_110 Hb_175758_010 Hb_175758_010 Hb_000203_080--Hb_175758_010 Hb_010839_010 Hb_010839_010 Hb_029576_080--Hb_010839_010 Hb_029576_080--Hb_000917_120 Hb_029576_080--Hb_009659_040 Hb_000011_120 Hb_000011_120 Hb_029576_080--Hb_000011_120 Hb_029576_080--Hb_170878_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0845656 0.0710259 0.113834 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.245346 0.157686

CAGE analysis