Hb_000614_190

Information

Type desease resistance
Description Gene Name: ABC_membrane
Location Contig614: 111924-117991
Sequence    

Annotation

kegg
ID rcu:RCOM_1082070
description multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative (EC:1.3.1.74)
nr
ID XP_012085613.1
description PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
swissprot
ID Q9LK64
description ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1
trembl
ID A0A067K4P5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17912 PE=3 SV=1
Gene Ontology
ID GO:0016021
description abc transporter c family member 15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51135: 111969-112782 , PASA_asmbl_51136: 112824-113282 , PASA_asmbl_51137: 114058-115221 , PASA_asmbl_51138: 115402-115706
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000614_190 0.0 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
2 Hb_114310_050 0.0702994179 - - Iron(III)-zinc(II) purple acid phosphatase precursor family protein [Populus trichocarpa]
3 Hb_005054_280 0.071830446 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
4 Hb_007420_020 0.0763431159 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
5 Hb_026144_030 0.0840074156 - - PREDICTED: high affinity nitrate transporter 2.5 [Jatropha curcas]
6 Hb_005034_010 0.0885149517 - - alcohol dehydrogenase, putative [Ricinus communis]
7 Hb_001174_030 0.0965108765 - - unnamed protein product [Vitis vinifera]
8 Hb_003077_140 0.0993268996 - - hypothetical protein JCGZ_16294 [Jatropha curcas]
9 Hb_002000_130 0.1008585719 - - PREDICTED: abscisic stress-ripening protein 2-like [Eucalyptus grandis]
10 Hb_004306_140 0.1013971166 - - calcineurin-like phosphoesterase [Manihot esculenta]
11 Hb_001143_140 0.1015716574 - - Aldehyde dehydrogenase, putative [Ricinus communis]
12 Hb_001153_090 0.1034367185 - - PREDICTED: protein FAM63A [Jatropha curcas]
13 Hb_008111_010 0.103516644 - - hypothetical protein VITISV_021527 [Vitis vinifera]
14 Hb_123560_050 0.1049362339 - - PREDICTED: probable receptor-like protein kinase At5g24010 [Jatropha curcas]
15 Hb_003562_040 0.1101450982 - - PREDICTED: septum-promoting GTP-binding protein 1-like [Jatropha curcas]
16 Hb_000589_240 0.1130055856 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
17 Hb_001706_020 0.113082211 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
18 Hb_001819_010 0.1136205393 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
19 Hb_008092_020 0.1146062987 - - transcription factor, putative [Ricinus communis]
20 Hb_001357_360 0.1155646122 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000614_190 Hb_000614_190 Hb_114310_050 Hb_114310_050 Hb_000614_190--Hb_114310_050 Hb_005054_280 Hb_005054_280 Hb_000614_190--Hb_005054_280 Hb_007420_020 Hb_007420_020 Hb_000614_190--Hb_007420_020 Hb_026144_030 Hb_026144_030 Hb_000614_190--Hb_026144_030 Hb_005034_010 Hb_005034_010 Hb_000614_190--Hb_005034_010 Hb_001174_030 Hb_001174_030 Hb_000614_190--Hb_001174_030 Hb_114310_050--Hb_007420_020 Hb_114310_050--Hb_005054_280 Hb_007420_010 Hb_007420_010 Hb_114310_050--Hb_007420_010 Hb_004306_140 Hb_004306_140 Hb_114310_050--Hb_004306_140 Hb_001515_030 Hb_001515_030 Hb_114310_050--Hb_001515_030 Hb_005054_280--Hb_007420_020 Hb_003562_040 Hb_003562_040 Hb_005054_280--Hb_003562_040 Hb_005054_280--Hb_005034_010 Hb_008111_010 Hb_008111_010 Hb_005054_280--Hb_008111_010 Hb_007420_020--Hb_007420_010 Hb_123560_050 Hb_123560_050 Hb_007420_020--Hb_123560_050 Hb_007420_020--Hb_026144_030 Hb_026144_030--Hb_008111_010 Hb_000767_010 Hb_000767_010 Hb_026144_030--Hb_000767_010 Hb_001143_140 Hb_001143_140 Hb_026144_030--Hb_001143_140 Hb_026144_030--Hb_123560_050 Hb_005034_010--Hb_001174_030 Hb_005034_010--Hb_003562_040 Hb_174101_010 Hb_174101_010 Hb_005034_010--Hb_174101_010 Hb_003835_030 Hb_003835_030 Hb_005034_010--Hb_003835_030 Hb_001544_070 Hb_001544_070 Hb_001174_030--Hb_001544_070 Hb_001706_020 Hb_001706_020 Hb_001174_030--Hb_001706_020 Hb_001174_030--Hb_174101_010 Hb_000472_020 Hb_000472_020 Hb_001174_030--Hb_000472_020 Hb_001174_030--Hb_003562_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0144735 10.4298 3.8081 6.76025 0.072854 0.0805749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.060207 0 6.86462 8.01679

CAGE analysis