Hb_000377_160

Information

Type -
Description -
Location Contig377: 241221-245909
Sequence    

Annotation

kegg
ID tcc:TCM_030433
description Oligopeptide transporter isoform 1
nr
ID XP_012074788.1
description PREDICTED: oligopeptide transporter 3 [Jatropha curcas]
swissprot
ID O23482
description Oligopeptide transporter 3 OS=Arabidopsis thaliana GN=OPT3 PE=2 SV=3
trembl
ID A0A067KTA3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08943 PE=4 SV=1
Gene Ontology
ID GO:0055085
description oligopeptide transporter 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38410: 241151-245923
cDNA
(Sanger)
(ID:Location)		 046_C17.ab1: 244952-245912

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000377_160 0.0 - - PREDICTED: oligopeptide transporter 3 [Jatropha curcas]
2 Hb_000649_280 0.0546370388 - - PREDICTED: F-box protein PP2-B10-like [Pyrus x bretschneideri]
3 Hb_003767_010 0.0760108438 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
4 Hb_123560_050 0.0854020645 - - PREDICTED: probable receptor-like protein kinase At5g24010 [Jatropha curcas]
5 Hb_005470_040 0.1007377475 - - hypothetical protein POPTR_0015s09760g [Populus trichocarpa]
6 Hb_000563_120 0.1025019763 - - hypothetical protein JCGZ_18936 [Jatropha curcas]
7 Hb_031949_010 0.1067483401 - - -
8 Hb_001085_230 0.1119040734 - - PREDICTED: receptor like protein kinase S.2 [Jatropha curcas]
9 Hb_001357_360 0.1136664585 - - zinc finger protein, putative [Ricinus communis]
10 Hb_007420_010 0.1163021352 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X2 [Jatropha curcas]
11 Hb_001819_010 0.1167518894 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
12 Hb_109489_010 0.1199150964 - - multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
13 Hb_007420_020 0.1215783011 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
14 Hb_001971_020 0.1226436207 - - PREDICTED: alpha-dioxygenase 2 [Populus euphratica]
15 Hb_007919_030 0.125806164 - - -
16 Hb_000264_340 0.1263539235 - - PREDICTED: callose synthase 11-like isoform X1 [Jatropha curcas]
17 Hb_114310_050 0.127060127 - - Iron(III)-zinc(II) purple acid phosphatase precursor family protein [Populus trichocarpa]
18 Hb_002217_200 0.1272095906 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
19 Hb_003077_140 0.1287257254 - - hypothetical protein JCGZ_16294 [Jatropha curcas]
20 Hb_029866_110 0.1328046986 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 10-like [Jatropha curcas]

Gene co-expression network

sample Hb_000377_160 Hb_000377_160 Hb_000649_280 Hb_000649_280 Hb_000377_160--Hb_000649_280 Hb_003767_010 Hb_003767_010 Hb_000377_160--Hb_003767_010 Hb_123560_050 Hb_123560_050 Hb_000377_160--Hb_123560_050 Hb_005470_040 Hb_005470_040 Hb_000377_160--Hb_005470_040 Hb_000563_120 Hb_000563_120 Hb_000377_160--Hb_000563_120 Hb_031949_010 Hb_031949_010 Hb_000377_160--Hb_031949_010 Hb_000649_280--Hb_003767_010 Hb_000649_280--Hb_000563_120 Hb_007420_010 Hb_007420_010 Hb_000649_280--Hb_007420_010 Hb_001907_020 Hb_001907_020 Hb_000649_280--Hb_001907_020 Hb_000649_280--Hb_123560_050 Hb_029866_110 Hb_029866_110 Hb_003767_010--Hb_029866_110 Hb_002217_200 Hb_002217_200 Hb_003767_010--Hb_002217_200 Hb_003767_010--Hb_123560_050 Hb_109489_010 Hb_109489_010 Hb_003767_010--Hb_109489_010 Hb_001819_010 Hb_001819_010 Hb_123560_050--Hb_001819_010 Hb_003077_140 Hb_003077_140 Hb_123560_050--Hb_003077_140 Hb_123560_050--Hb_029866_110 Hb_007420_020 Hb_007420_020 Hb_123560_050--Hb_007420_020 Hb_026144_030 Hb_026144_030 Hb_123560_050--Hb_026144_030 Hb_005470_040--Hb_031949_010 Hb_000264_340 Hb_000264_340 Hb_005470_040--Hb_000264_340 Hb_001357_360 Hb_001357_360 Hb_005470_040--Hb_001357_360 Hb_005470_040--Hb_109489_010 Hb_005470_040--Hb_123560_050 Hb_114310_050 Hb_114310_050 Hb_000563_120--Hb_114310_050 Hb_001971_020 Hb_001971_020 Hb_000563_120--Hb_001971_020 Hb_001085_230 Hb_001085_230 Hb_000563_120--Hb_001085_230 Hb_009803_030 Hb_009803_030 Hb_000563_120--Hb_009803_030 Hb_001856_110 Hb_001856_110 Hb_031949_010--Hb_001856_110 Hb_000009_390 Hb_000009_390 Hb_031949_010--Hb_000009_390 Hb_026053_030 Hb_026053_030 Hb_031949_010--Hb_026053_030 Hb_000417_150 Hb_000417_150 Hb_031949_010--Hb_000417_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0733926 99.2994 23.9511 27.0382 0.0372519 0.115966
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.210922 0.290451 0.210957 78.0598 73.4182

CAGE analysis