Hb_002739_060

Information

Type -
Description -
Location Contig2739: 61118-68266
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0004351
description glutamate decarboxylase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28634: 61097-79966 , PASA_asmbl_28635: 61867-62205
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002739_060 0.0 - - -
2 Hb_008175_030 0.0895330748 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]
3 Hb_000532_130 0.0959497278 - - hypothetical protein [Anabaena sp. PCC 7108]
4 Hb_000778_020 0.1168627542 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
5 Hb_001408_150 0.1205694006 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
6 Hb_005880_010 0.1361706122 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
7 Hb_002609_150 0.1364549671 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
8 Hb_000007_160 0.1471881529 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
9 Hb_000197_230 0.1472939981 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
10 Hb_007618_010 0.1484787077 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
11 Hb_062229_010 0.1492764574 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
12 Hb_007253_040 0.1539829095 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]
13 Hb_000657_030 0.1544344251 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
14 Hb_002218_070 0.1575316735 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
15 Hb_057079_020 0.1584005761 - - conserved hypothetical protein [Ricinus communis]
16 Hb_010605_010 0.1590248015 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
17 Hb_007709_010 0.1607464866 - - -
18 Hb_010253_020 0.1616222387 - - alcohol dehydrogenase, putative [Ricinus communis]
19 Hb_001921_010 0.1623306628 - - ATP-dependent RNA helicase, putative [Ricinus communis]
20 Hb_043939_010 0.1642175697 - - hypothetical protein B456_N011100 [Gossypium raimondii]

Gene co-expression network

sample Hb_002739_060 Hb_002739_060 Hb_008175_030 Hb_008175_030 Hb_002739_060--Hb_008175_030 Hb_000532_130 Hb_000532_130 Hb_002739_060--Hb_000532_130 Hb_000778_020 Hb_000778_020 Hb_002739_060--Hb_000778_020 Hb_001408_150 Hb_001408_150 Hb_002739_060--Hb_001408_150 Hb_005880_010 Hb_005880_010 Hb_002739_060--Hb_005880_010 Hb_002609_150 Hb_002609_150 Hb_002739_060--Hb_002609_150 Hb_008175_030--Hb_000778_020 Hb_008175_030--Hb_005880_010 Hb_008175_030--Hb_001408_150 Hb_057079_020 Hb_057079_020 Hb_008175_030--Hb_057079_020 Hb_008175_030--Hb_000532_130 Hb_007253_040 Hb_007253_040 Hb_000532_130--Hb_007253_040 Hb_000532_130--Hb_001408_150 Hb_000532_130--Hb_002609_150 Hb_060909_010 Hb_060909_010 Hb_000532_130--Hb_060909_010 Hb_000778_020--Hb_057079_020 Hb_002928_180 Hb_002928_180 Hb_000778_020--Hb_002928_180 Hb_010253_020 Hb_010253_020 Hb_000778_020--Hb_010253_020 Hb_000778_020--Hb_001408_150 Hb_000189_120 Hb_000189_120 Hb_000778_020--Hb_000189_120 Hb_001408_150--Hb_060909_010 Hb_000197_230 Hb_000197_230 Hb_001408_150--Hb_000197_230 Hb_002833_020 Hb_002833_020 Hb_005880_010--Hb_002833_020 Hb_002660_040 Hb_002660_040 Hb_005880_010--Hb_002660_040 Hb_005880_010--Hb_000778_020 Hb_000261_320 Hb_000261_320 Hb_005880_010--Hb_000261_320 Hb_001369_160 Hb_001369_160 Hb_005880_010--Hb_001369_160 Hb_001879_050 Hb_001879_050 Hb_002609_150--Hb_001879_050 Hb_001148_040 Hb_001148_040 Hb_002609_150--Hb_001148_040 Hb_000007_160 Hb_000007_160 Hb_002609_150--Hb_000007_160 Hb_000172_010 Hb_000172_010 Hb_002609_150--Hb_000172_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3846 95.6869 15.1234 28.9846 5.01171 8.30511
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0926208 0.0971568 0.0913037 66.0644 24.401

CAGE analysis