Hb_060909_010

Information

Type -
Description -
Location Contig60909: 169-966
Sequence    

Annotation

kegg
ID vvi:100246093
description uncharacterized LOC100246093
nr
ID XP_010660145.1
description PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
swissprot
ID Q42484
description Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1
trembl
ID U5GAL4
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0005s042901g PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance gene nbs-lrr family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50890: 547-917
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_060909_010 0.0 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
2 Hb_001408_150 0.1080043239 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
3 Hb_000544_020 0.1133677714 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
4 Hb_000233_100 0.1201168565 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
5 Hb_004648_100 0.1243360874 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
6 Hb_008226_100 0.1250262061 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
7 Hb_000532_130 0.132159727 - - hypothetical protein [Anabaena sp. PCC 7108]
8 Hb_007253_040 0.1381664743 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]
9 Hb_163658_010 0.1417424869 - - Disease resistance protein RPS5, putative [Ricinus communis]
10 Hb_008175_030 0.1425764492 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]
11 Hb_057079_020 0.1469635293 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000778_020 0.1476895929 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
13 Hb_169620_010 0.1492615559 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
14 Hb_062229_010 0.1539277772 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
15 Hb_036568_010 0.1541873651 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 23 [Jatropha curcas]
16 Hb_147873_010 0.1547912705 - - PREDICTED: uncharacterized protein LOC102595311 [Solanum tuberosum]
17 Hb_001410_010 0.1562199348 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
18 Hb_011310_200 0.1562227568 - - grr1, plant, putative [Ricinus communis]
19 Hb_001921_010 0.1566742905 - - ATP-dependent RNA helicase, putative [Ricinus communis]
20 Hb_158696_010 0.1579391415 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]

Gene co-expression network

sample Hb_060909_010 Hb_060909_010 Hb_001408_150 Hb_001408_150 Hb_060909_010--Hb_001408_150 Hb_000544_020 Hb_000544_020 Hb_060909_010--Hb_000544_020 Hb_000233_100 Hb_000233_100 Hb_060909_010--Hb_000233_100 Hb_004648_100 Hb_004648_100 Hb_060909_010--Hb_004648_100 Hb_008226_100 Hb_008226_100 Hb_060909_010--Hb_008226_100 Hb_000532_130 Hb_000532_130 Hb_060909_010--Hb_000532_130 Hb_000778_020 Hb_000778_020 Hb_001408_150--Hb_000778_020 Hb_008175_030 Hb_008175_030 Hb_001408_150--Hb_008175_030 Hb_002739_060 Hb_002739_060 Hb_001408_150--Hb_002739_060 Hb_001408_150--Hb_000532_130 Hb_000197_230 Hb_000197_230 Hb_001408_150--Hb_000197_230 Hb_158696_010 Hb_158696_010 Hb_000544_020--Hb_158696_010 Hb_000984_100 Hb_000984_100 Hb_000544_020--Hb_000984_100 Hb_000544_020--Hb_004648_100 Hb_001248_110 Hb_001248_110 Hb_000544_020--Hb_001248_110 Hb_000544_020--Hb_000532_130 Hb_000233_100--Hb_001408_150 Hb_036568_010 Hb_036568_010 Hb_000233_100--Hb_036568_010 Hb_057079_020 Hb_057079_020 Hb_000233_100--Hb_057079_020 Hb_002475_130 Hb_002475_130 Hb_000233_100--Hb_002475_130 Hb_001410_010 Hb_001410_010 Hb_000233_100--Hb_001410_010 Hb_169620_010 Hb_169620_010 Hb_004648_100--Hb_169620_010 Hb_004648_100--Hb_057079_020 Hb_004648_100--Hb_001410_010 Hb_011310_200 Hb_011310_200 Hb_004648_100--Hb_011310_200 Hb_000216_020 Hb_000216_020 Hb_008226_100--Hb_000216_020 Hb_004976_040 Hb_004976_040 Hb_008226_100--Hb_004976_040 Hb_008226_100--Hb_011310_200 Hb_089100_040 Hb_089100_040 Hb_008226_100--Hb_089100_040 Hb_007253_040 Hb_007253_040 Hb_008226_100--Hb_007253_040 Hb_000532_130--Hb_002739_060 Hb_000532_130--Hb_007253_040 Hb_000532_130--Hb_008175_030 Hb_002609_150 Hb_002609_150 Hb_000532_130--Hb_002609_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.339572 5.63409 0.751107 1.64963 0.26012 0.959116
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0677109 0 0.288854 2.19827 1.38902

CAGE analysis