Hb_004976_040

Information

Type -
Description -
Location Contig4976: 24875-39029
Sequence    

Annotation

kegg
ID rcu:RCOM_1429140
description hypothetical protein
nr
ID XP_012089175.1
description PREDICTED: protein HASTY 1 [Jatropha curcas]
swissprot
ID Q0WP44
description Protein HASTY 1 OS=Arabidopsis thaliana GN=HST1 PE=1 SV=1
trembl
ID B9REW0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1429140 PE=4 SV=1
Gene Ontology
ID GO:0048367
description protein hasty 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004976_040 0.0 - - PREDICTED: protein HASTY 1 [Jatropha curcas]
2 Hb_000645_240 0.1268053748 - - AMP dependent ligase, putative [Ricinus communis]
3 Hb_008226_100 0.1315701826 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
4 Hb_000010_350 0.1494642517 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
5 Hb_000866_090 0.150619883 - - PREDICTED: U-box domain-containing protein 33-like isoform X3 [Jatropha curcas]
6 Hb_004126_080 0.1519703344 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
7 Hb_089100_040 0.1534473967 - - PREDICTED: uncharacterized protein LOC105638961 [Jatropha curcas]
8 Hb_000216_020 0.1554322937 - - PREDICTED: benzaldehyde dehydrogenase (NAD(+))-like [Jatropha curcas]
9 Hb_008175_030 0.1555812176 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]
10 Hb_000022_180 0.1562463821 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
11 Hb_020178_050 0.1588868782 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
12 Hb_004466_070 0.1598264958 - - hypothetical protein RCOM_1447500 [Ricinus communis]
13 Hb_000448_060 0.1630794586 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
14 Hb_008667_060 0.1634776714 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
15 Hb_011310_200 0.1641501267 - - grr1, plant, putative [Ricinus communis]
16 Hb_002686_400 0.1651099406 - - hypothetical protein POPTR_0019s04500g [Populus trichocarpa]
17 Hb_001699_150 0.1674036491 - - hypothetical protein POPTR_0009s13450g [Populus trichocarpa]
18 Hb_001921_010 0.1675608918 - - ATP-dependent RNA helicase, putative [Ricinus communis]
19 Hb_000866_370 0.1683757087 - - synaptotagmin, putative [Ricinus communis]
20 Hb_000538_190 0.1688183474 - - PREDICTED: protein DJ-1 homolog D [Jatropha curcas]

Gene co-expression network

sample Hb_004976_040 Hb_004976_040 Hb_000645_240 Hb_000645_240 Hb_004976_040--Hb_000645_240 Hb_008226_100 Hb_008226_100 Hb_004976_040--Hb_008226_100 Hb_000010_350 Hb_000010_350 Hb_004976_040--Hb_000010_350 Hb_000866_090 Hb_000866_090 Hb_004976_040--Hb_000866_090 Hb_004126_080 Hb_004126_080 Hb_004976_040--Hb_004126_080 Hb_089100_040 Hb_089100_040 Hb_004976_040--Hb_089100_040 Hb_000645_240--Hb_000866_090 Hb_000022_180 Hb_000022_180 Hb_000645_240--Hb_000022_180 Hb_000866_370 Hb_000866_370 Hb_000645_240--Hb_000866_370 Hb_000081_120 Hb_000081_120 Hb_000645_240--Hb_000081_120 Hb_000345_340 Hb_000345_340 Hb_000645_240--Hb_000345_340 Hb_000216_020 Hb_000216_020 Hb_008226_100--Hb_000216_020 Hb_060909_010 Hb_060909_010 Hb_008226_100--Hb_060909_010 Hb_011310_200 Hb_011310_200 Hb_008226_100--Hb_011310_200 Hb_008226_100--Hb_089100_040 Hb_007253_040 Hb_007253_040 Hb_008226_100--Hb_007253_040 Hb_000062_080 Hb_000062_080 Hb_000010_350--Hb_000062_080 Hb_001865_060 Hb_001865_060 Hb_000010_350--Hb_001865_060 Hb_000010_350--Hb_000866_370 Hb_004108_170 Hb_004108_170 Hb_000010_350--Hb_004108_170 Hb_000448_060 Hb_000448_060 Hb_000010_350--Hb_000448_060 Hb_000010_350--Hb_089100_040 Hb_001080_140 Hb_001080_140 Hb_000866_090--Hb_001080_140 Hb_002471_140 Hb_002471_140 Hb_000866_090--Hb_002471_140 Hb_008667_060 Hb_008667_060 Hb_000866_090--Hb_008667_060 Hb_000802_190 Hb_000802_190 Hb_000866_090--Hb_000802_190 Hb_001699_150 Hb_001699_150 Hb_000866_090--Hb_001699_150 Hb_148682_010 Hb_148682_010 Hb_004126_080--Hb_148682_010 Hb_004126_080--Hb_001699_150 Hb_004800_240 Hb_004800_240 Hb_004126_080--Hb_004800_240 Hb_001646_010 Hb_001646_010 Hb_004126_080--Hb_001646_010 Hb_001195_020 Hb_001195_020 Hb_004126_080--Hb_001195_020 Hb_159295_010 Hb_159295_010 Hb_004126_080--Hb_159295_010 Hb_000189_470 Hb_000189_470 Hb_089100_040--Hb_000189_470 Hb_089100_040--Hb_000866_370 Hb_000362_090 Hb_000362_090 Hb_089100_040--Hb_000362_090 Hb_009897_010 Hb_009897_010 Hb_089100_040--Hb_009897_010 Hb_089100_040--Hb_000216_020 Hb_065500_030 Hb_065500_030 Hb_089100_040--Hb_065500_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.147351 4.27948 0.865182 0.703585 0.600119 0.587593
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.207042 0.191685 0.147043 1.97877 0.676687

CAGE analysis