Hb_004800_240

Information

Type -
Description -
Location Contig4800: 181258-190910
Sequence    

Annotation

kegg
ID rcu:RCOM_0536720
description hypothetical protein
nr
ID XP_012071642.1
description PREDICTED: vam6/Vps39-like protein [Jatropha curcas]
swissprot
ID Q8R5L3
description Vam6/Vps39-like protein OS=Mus musculus GN=Vps39 PE=2 SV=1
trembl
ID A0A067L3D4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05311 PE=4 SV=1
Gene Ontology
ID GO:0005622
description vam6 vps39-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44715: 181371-190850
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004800_240 0.0 - - PREDICTED: vam6/Vps39-like protein [Jatropha curcas]
2 Hb_009193_110 0.0886748117 - - PREDICTED: wall-associated receptor kinase-like 1 isoform X1 [Jatropha curcas]
3 Hb_148682_010 0.0989726371 - - PREDICTED: uncharacterized protein LOC105630720 [Jatropha curcas]
4 Hb_012038_010 0.1065394632 - - phospholipid-transporting atpase, putative [Ricinus communis]
5 Hb_001646_010 0.1084051342 - - hypothetical protein JCGZ_16333 [Jatropha curcas]
6 Hb_000334_130 0.1086178219 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
7 Hb_004126_080 0.1095212368 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
8 Hb_044486_040 0.1103420919 - - PREDICTED: ion channel CASTOR-like [Malus domestica]
9 Hb_000362_090 0.1138055609 - - PREDICTED: uncharacterized protein LOC105635736 isoform X1 [Jatropha curcas]
10 Hb_007031_040 0.1145564622 transcription factor TF Family: bZIP PREDICTED: bZIP transcription factor 17-like [Jatropha curcas]
11 Hb_001259_110 0.1156221547 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
12 Hb_002942_110 0.1158706184 transcription factor TF Family: ARF PREDICTED: auxin response factor 2-like [Jatropha curcas]
13 Hb_178051_070 0.1193741067 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
14 Hb_002387_070 0.120192954 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial [Jatropha curcas]
15 Hb_000751_140 0.1212748613 - - PREDICTED: clathrin interactor EPSIN 2 [Jatropha curcas]
16 Hb_159295_010 0.1220278078 - - hypothetical protein RCOM_1520720 [Ricinus communis]
17 Hb_009674_080 0.1228028021 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
18 Hb_001911_010 0.1229585005 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
19 Hb_000700_060 0.1251857441 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
20 Hb_000117_070 0.1275705739 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]

Gene co-expression network

sample Hb_004800_240 Hb_004800_240 Hb_009193_110 Hb_009193_110 Hb_004800_240--Hb_009193_110 Hb_148682_010 Hb_148682_010 Hb_004800_240--Hb_148682_010 Hb_012038_010 Hb_012038_010 Hb_004800_240--Hb_012038_010 Hb_001646_010 Hb_001646_010 Hb_004800_240--Hb_001646_010 Hb_000334_130 Hb_000334_130 Hb_004800_240--Hb_000334_130 Hb_004126_080 Hb_004126_080 Hb_004800_240--Hb_004126_080 Hb_000362_090 Hb_000362_090 Hb_009193_110--Hb_000362_090 Hb_009193_110--Hb_012038_010 Hb_000917_100 Hb_000917_100 Hb_009193_110--Hb_000917_100 Hb_002942_110 Hb_002942_110 Hb_009193_110--Hb_002942_110 Hb_008406_040 Hb_008406_040 Hb_009193_110--Hb_008406_040 Hb_148682_010--Hb_004126_080 Hb_148682_010--Hb_001646_010 Hb_001195_020 Hb_001195_020 Hb_148682_010--Hb_001195_020 Hb_001699_150 Hb_001699_150 Hb_148682_010--Hb_001699_150 Hb_044486_040 Hb_044486_040 Hb_148682_010--Hb_044486_040 Hb_044653_020 Hb_044653_020 Hb_012038_010--Hb_044653_020 Hb_009674_080 Hb_009674_080 Hb_012038_010--Hb_009674_080 Hb_004324_060 Hb_004324_060 Hb_012038_010--Hb_004324_060 Hb_003895_020 Hb_003895_020 Hb_012038_010--Hb_003895_020 Hb_012038_010--Hb_002942_110 Hb_000526_060 Hb_000526_060 Hb_012038_010--Hb_000526_060 Hb_001646_010--Hb_044486_040 Hb_001341_160 Hb_001341_160 Hb_001646_010--Hb_001341_160 Hb_002374_210 Hb_002374_210 Hb_001646_010--Hb_002374_210 Hb_011202_030 Hb_011202_030 Hb_001646_010--Hb_011202_030 Hb_000010_420 Hb_000010_420 Hb_001646_010--Hb_000010_420 Hb_002005_030 Hb_002005_030 Hb_001646_010--Hb_002005_030 Hb_001221_090 Hb_001221_090 Hb_000334_130--Hb_001221_090 Hb_002092_070 Hb_002092_070 Hb_000334_130--Hb_002092_070 Hb_002027_280 Hb_002027_280 Hb_000334_130--Hb_002027_280 Hb_001454_170 Hb_001454_170 Hb_000334_130--Hb_001454_170 Hb_004429_010 Hb_004429_010 Hb_000334_130--Hb_004429_010 Hb_000352_070 Hb_000352_070 Hb_000334_130--Hb_000352_070 Hb_004126_080--Hb_001699_150 Hb_004126_080--Hb_001646_010 Hb_004126_080--Hb_001195_020 Hb_159295_010 Hb_159295_010 Hb_004126_080--Hb_159295_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7637 54.6509 23.3962 26.2698 30.4202 11.9
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.63271 3.89685 7.81523 28.1793 15.587

CAGE analysis