Hb_001195_020

Information

Type -
Description -
Location Contig1195: 14703-17232
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa007159mg
description hypothetical protein
nr
ID XP_012071894.1
description PREDICTED: ornithine carbamoyltransferase, chloroplastic [Jatropha curcas]
swissprot
ID Q43814
description Ornithine carbamoyltransferase, chloroplastic OS=Pisum sativum GN=ARGF PE=2 SV=1
trembl
ID A0A067KQN5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04456 PE=3 SV=1
Gene Ontology
ID GO:0004585
description ornithine chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05761: 14639-15416
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_020 0.0 - - PREDICTED: ornithine carbamoyltransferase, chloroplastic [Jatropha curcas]
2 Hb_148682_010 0.1022989323 - - PREDICTED: uncharacterized protein LOC105630720 [Jatropha curcas]
3 Hb_000953_040 0.1146308201 - - hypothetical protein OsJ_19135 [Oryza sativa Japonica Group]
4 Hb_000866_090 0.1152401391 - - PREDICTED: U-box domain-containing protein 33-like isoform X3 [Jatropha curcas]
5 Hb_007765_030 0.1158297967 - - PREDICTED: neutral ceramidase [Jatropha curcas]
6 Hb_004800_130 0.1181162983 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
7 Hb_004126_080 0.1189658292 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
8 Hb_001205_180 0.1266048405 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
9 Hb_000834_230 0.128306599 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
10 Hb_000622_280 0.1303812181 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
11 Hb_001699_150 0.130442866 - - hypothetical protein POPTR_0009s13450g [Populus trichocarpa]
12 Hb_110567_010 0.1307682133 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic-like [Jatropha curcas]
13 Hb_000345_340 0.1314178414 - - PREDICTED: DNA polymerase zeta catalytic subunit [Jatropha curcas]
14 Hb_000133_090 0.1328770656 - - PREDICTED: uncharacterized protein LOC105629320 [Jatropha curcas]
15 Hb_002812_010 0.1335092333 - - PREDICTED: chitin elicitor receptor kinase 1 isoform X1 [Jatropha curcas]
16 Hb_017914_010 0.1337026547 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
17 Hb_001080_140 0.134417719 transcription factor TF Family: RWP-RK conserved hypothetical protein [Ricinus communis]
18 Hb_001396_010 0.1386043018 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
19 Hb_002471_140 0.1386190854 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
20 Hb_083078_010 0.1399520349 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]

Gene co-expression network

sample Hb_001195_020 Hb_001195_020 Hb_148682_010 Hb_148682_010 Hb_001195_020--Hb_148682_010 Hb_000953_040 Hb_000953_040 Hb_001195_020--Hb_000953_040 Hb_000866_090 Hb_000866_090 Hb_001195_020--Hb_000866_090 Hb_007765_030 Hb_007765_030 Hb_001195_020--Hb_007765_030 Hb_004800_130 Hb_004800_130 Hb_001195_020--Hb_004800_130 Hb_004126_080 Hb_004126_080 Hb_001195_020--Hb_004126_080 Hb_148682_010--Hb_004126_080 Hb_001646_010 Hb_001646_010 Hb_148682_010--Hb_001646_010 Hb_004800_240 Hb_004800_240 Hb_148682_010--Hb_004800_240 Hb_001699_150 Hb_001699_150 Hb_148682_010--Hb_001699_150 Hb_044486_040 Hb_044486_040 Hb_148682_010--Hb_044486_040 Hb_110567_010 Hb_110567_010 Hb_000953_040--Hb_110567_010 Hb_002471_140 Hb_002471_140 Hb_000953_040--Hb_002471_140 Hb_029622_020 Hb_029622_020 Hb_000953_040--Hb_029622_020 Hb_001842_060 Hb_001842_060 Hb_000953_040--Hb_001842_060 Hb_005504_030 Hb_005504_030 Hb_000953_040--Hb_005504_030 Hb_000645_240 Hb_000645_240 Hb_000866_090--Hb_000645_240 Hb_001080_140 Hb_001080_140 Hb_000866_090--Hb_001080_140 Hb_000866_090--Hb_002471_140 Hb_008667_060 Hb_008667_060 Hb_000866_090--Hb_008667_060 Hb_000802_190 Hb_000802_190 Hb_000866_090--Hb_000802_190 Hb_000866_090--Hb_001699_150 Hb_002217_220 Hb_002217_220 Hb_007765_030--Hb_002217_220 Hb_000260_660 Hb_000260_660 Hb_007765_030--Hb_000260_660 Hb_001414_040 Hb_001414_040 Hb_007765_030--Hb_001414_040 Hb_001341_160 Hb_001341_160 Hb_007765_030--Hb_001341_160 Hb_000220_120 Hb_000220_120 Hb_007765_030--Hb_000220_120 Hb_000834_230 Hb_000834_230 Hb_007765_030--Hb_000834_230 Hb_001205_180 Hb_001205_180 Hb_004800_130--Hb_001205_180 Hb_001133_090 Hb_001133_090 Hb_004800_130--Hb_001133_090 Hb_002553_010 Hb_002553_010 Hb_004800_130--Hb_002553_010 Hb_010775_010 Hb_010775_010 Hb_004800_130--Hb_010775_010 Hb_006794_020 Hb_006794_020 Hb_004800_130--Hb_006794_020 Hb_159295_010 Hb_159295_010 Hb_004800_130--Hb_159295_010 Hb_004126_080--Hb_001699_150 Hb_004126_080--Hb_004800_240 Hb_004126_080--Hb_001646_010 Hb_004126_080--Hb_159295_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.837008 6.95654 4.11114 2.96231 2.26248 0.973548
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.883006 1.41819 0.648683 6.92328 2.46657

CAGE analysis