Hb_004800_130

Information

Type -
Description -
Location Contig4800: 99120-104434
Sequence    

Annotation

kegg
ID rcu:RCOM_0536950
description U1 small nuclear ribonucleoprotein 70 kDa, putative
nr
ID XP_006383218.1
description hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
swissprot
ID Q42404
description U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana GN=RNU1 PE=1 SV=1
trembl
ID U5GC46
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s12580g PE=4 SV=1
Gene Ontology
ID GO:0019013
description u1 small nuclear ribonucleoprotein 70 kda

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44690: 99121-104320 , PASA_asmbl_44691: 99112-102091 , PASA_asmbl_44692: 99112-104385
cDNA
(Sanger)
(ID:Location)		 034_K18.ab1: 99121-100873

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004800_130 0.0 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
2 Hb_001205_180 0.048835388 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
3 Hb_001133_090 0.0807864237 - - hypothetical protein POPTR_0012s02680g [Populus trichocarpa]
4 Hb_002553_010 0.088168594 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 2-like [Populus euphratica]
5 Hb_010775_010 0.0920370824 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
6 Hb_006794_020 0.0974109234 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
7 Hb_159295_010 0.1003993766 - - hypothetical protein RCOM_1520720 [Ricinus communis]
8 Hb_001488_210 0.1028351308 - - PREDICTED: protein RIK [Jatropha curcas]
9 Hb_000622_280 0.103222895 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
10 Hb_007031_040 0.1036573716 transcription factor TF Family: bZIP PREDICTED: bZIP transcription factor 17-like [Jatropha curcas]
11 Hb_000270_700 0.1056419313 - - PREDICTED: protease Do-like 9 [Populus euphratica]
12 Hb_000421_110 0.1067335359 - - PREDICTED: V-type proton ATPase subunit a1 isoform X2 [Jatropha curcas]
13 Hb_148682_010 0.1081584546 - - PREDICTED: uncharacterized protein LOC105630720 [Jatropha curcas]
14 Hb_000665_260 0.1086266265 - - PREDICTED: uncharacterized protein LOC105637620 isoform X1 [Jatropha curcas]
15 Hb_000796_120 0.1089162896 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
16 Hb_005288_050 0.1104911467 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR4 [Jatropha curcas]
17 Hb_005885_030 0.1112780125 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
18 Hb_002259_110 0.1116853731 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
19 Hb_003050_150 0.1118573536 - - endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative [Ricinus communis]
20 Hb_002609_190 0.1137499689 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]

Gene co-expression network

sample Hb_004800_130 Hb_004800_130 Hb_001205_180 Hb_001205_180 Hb_004800_130--Hb_001205_180 Hb_001133_090 Hb_001133_090 Hb_004800_130--Hb_001133_090 Hb_002553_010 Hb_002553_010 Hb_004800_130--Hb_002553_010 Hb_010775_010 Hb_010775_010 Hb_004800_130--Hb_010775_010 Hb_006794_020 Hb_006794_020 Hb_004800_130--Hb_006794_020 Hb_159295_010 Hb_159295_010 Hb_004800_130--Hb_159295_010 Hb_001205_180--Hb_001133_090 Hb_001205_180--Hb_002553_010 Hb_001205_180--Hb_010775_010 Hb_001488_210 Hb_001488_210 Hb_001205_180--Hb_001488_210 Hb_083078_010 Hb_083078_010 Hb_001205_180--Hb_083078_010 Hb_000421_110 Hb_000421_110 Hb_001133_090--Hb_000421_110 Hb_000418_050 Hb_000418_050 Hb_001133_090--Hb_000418_050 Hb_007031_040 Hb_007031_040 Hb_001133_090--Hb_007031_040 Hb_005885_030 Hb_005885_030 Hb_001133_090--Hb_005885_030 Hb_000270_700 Hb_000270_700 Hb_001133_090--Hb_000270_700 Hb_001133_090--Hb_010775_010 Hb_002259_110 Hb_002259_110 Hb_002553_010--Hb_002259_110 Hb_152910_010 Hb_152910_010 Hb_002553_010--Hb_152910_010 Hb_002553_010--Hb_001488_210 Hb_000856_300 Hb_000856_300 Hb_002553_010--Hb_000856_300 Hb_010775_010--Hb_005885_030 Hb_013358_060 Hb_013358_060 Hb_010775_010--Hb_013358_060 Hb_010775_010--Hb_006794_020 Hb_010775_010--Hb_001488_210 Hb_002686_410 Hb_002686_410 Hb_010775_010--Hb_002686_410 Hb_006794_020--Hb_013358_060 Hb_143629_020 Hb_143629_020 Hb_006794_020--Hb_143629_020 Hb_006794_020--Hb_005885_030 Hb_000331_100 Hb_000331_100 Hb_006794_020--Hb_000331_100 Hb_006794_020--Hb_000270_700 Hb_005765_040 Hb_005765_040 Hb_159295_010--Hb_005765_040 Hb_001911_010 Hb_001911_010 Hb_159295_010--Hb_001911_010 Hb_002812_010 Hb_002812_010 Hb_159295_010--Hb_002812_010 Hb_002249_050 Hb_002249_050 Hb_159295_010--Hb_002249_050 Hb_004526_010 Hb_004526_010 Hb_159295_010--Hb_004526_010 Hb_011249_060 Hb_011249_060 Hb_159295_010--Hb_011249_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.9832 128.061 96.9237 53.1018 34.9383 26.0193
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.0057 12.5038 11.7161 85.7598 47.9776

CAGE analysis