Hb_110567_010

Information

Type -
Description -
Location Contig110567: 1344-2619
Sequence    

Annotation

kegg
ID rcu:RCOM_1417160
description chaperone protein DNAj, putative
nr
ID XP_012085484.1
description PREDICTED: chaperone protein dnaJ 20, chloroplastic-like [Jatropha curcas]
swissprot
ID Q9SDN0
description Chaperone protein dnaJ 20, chloroplastic OS=Arabidopsis thaliana GN=ATJ20 PE=1 SV=2
trembl
ID B9SYM1
description Chaperone protein DNAj, putative OS=Ricinus communis GN=RCOM_1417160 PE=4 SV=1
Gene Ontology
ID GO:0005634
description chaperone protein dnaj chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03326: 1428-2627
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_110567_010 0.0 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic-like [Jatropha curcas]
2 Hb_000953_040 0.1098577069 - - hypothetical protein OsJ_19135 [Oryza sativa Japonica Group]
3 Hb_000866_140 0.1191240586 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
4 Hb_003417_030 0.1269015133 - - PREDICTED: sister chromatid cohesion 1 protein 2 isoform X1 [Jatropha curcas]
5 Hb_001195_020 0.1307682133 - - PREDICTED: ornithine carbamoyltransferase, chloroplastic [Jatropha curcas]
6 Hb_024714_070 0.1329480862 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
7 Hb_017914_010 0.1333041946 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
8 Hb_004208_140 0.1359765934 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
9 Hb_002387_040 0.1369957171 - - protein transporter, putative [Ricinus communis]
10 Hb_033363_010 0.1371115038 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
11 Hb_003428_090 0.143626987 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
12 Hb_000270_700 0.1450208826 - - PREDICTED: protease Do-like 9 [Populus euphratica]
13 Hb_002107_100 0.1491169567 - - PREDICTED: la-related protein 1C-like isoform X3 [Jatropha curcas]
14 Hb_000258_090 0.1499031776 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
15 Hb_002900_120 0.1507410883 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
16 Hb_003018_030 0.1510898417 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
17 Hb_003725_010 0.1541899826 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
18 Hb_005288_050 0.1553007969 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR4 [Jatropha curcas]
19 Hb_002812_010 0.1555040887 - - PREDICTED: chitin elicitor receptor kinase 1 isoform X1 [Jatropha curcas]
20 Hb_000699_210 0.155913817 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_110567_010 Hb_110567_010 Hb_000953_040 Hb_000953_040 Hb_110567_010--Hb_000953_040 Hb_000866_140 Hb_000866_140 Hb_110567_010--Hb_000866_140 Hb_003417_030 Hb_003417_030 Hb_110567_010--Hb_003417_030 Hb_001195_020 Hb_001195_020 Hb_110567_010--Hb_001195_020 Hb_024714_070 Hb_024714_070 Hb_110567_010--Hb_024714_070 Hb_017914_010 Hb_017914_010 Hb_110567_010--Hb_017914_010 Hb_000953_040--Hb_001195_020 Hb_002471_140 Hb_002471_140 Hb_000953_040--Hb_002471_140 Hb_029622_020 Hb_029622_020 Hb_000953_040--Hb_029622_020 Hb_001842_060 Hb_001842_060 Hb_000953_040--Hb_001842_060 Hb_005504_030 Hb_005504_030 Hb_000953_040--Hb_005504_030 Hb_003428_090 Hb_003428_090 Hb_000866_140--Hb_003428_090 Hb_003018_030 Hb_003018_030 Hb_000866_140--Hb_003018_030 Hb_000890_160 Hb_000890_160 Hb_000866_140--Hb_000890_160 Hb_000156_090 Hb_000156_090 Hb_000866_140--Hb_000156_090 Hb_008725_050 Hb_008725_050 Hb_000866_140--Hb_008725_050 Hb_002107_100 Hb_002107_100 Hb_000866_140--Hb_002107_100 Hb_003417_030--Hb_017914_010 Hb_003417_030--Hb_024714_070 Hb_003725_010 Hb_003725_010 Hb_003417_030--Hb_003725_010 Hb_012799_150 Hb_012799_150 Hb_003417_030--Hb_012799_150 Hb_003417_030--Hb_003428_090 Hb_121089_020 Hb_121089_020 Hb_003417_030--Hb_121089_020 Hb_148682_010 Hb_148682_010 Hb_001195_020--Hb_148682_010 Hb_000866_090 Hb_000866_090 Hb_001195_020--Hb_000866_090 Hb_007765_030 Hb_007765_030 Hb_001195_020--Hb_007765_030 Hb_004800_130 Hb_004800_130 Hb_001195_020--Hb_004800_130 Hb_004126_080 Hb_004126_080 Hb_001195_020--Hb_004126_080 Hb_024714_070--Hb_003725_010 Hb_024714_070--Hb_017914_010 Hb_002387_040 Hb_002387_040 Hb_024714_070--Hb_002387_040 Hb_000015_090 Hb_000015_090 Hb_024714_070--Hb_000015_090 Hb_013358_060 Hb_013358_060 Hb_024714_070--Hb_013358_060 Hb_017914_010--Hb_003725_010 Hb_017914_010--Hb_013358_060 Hb_000270_700 Hb_000270_700 Hb_017914_010--Hb_000270_700 Hb_010775_010 Hb_010775_010 Hb_017914_010--Hb_010775_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.80269 43.5456 31.4991 24.5018 11.7517 2.31616
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.01032 11.1593 7.92822 28.4687 13.0209

CAGE analysis