Hb_001842_060

Information

Type desease resistance
Description Gene Name: ABC_trans_N
Location Contig1842: 112239-119623
Sequence    

Annotation

kegg
ID rcu:RCOM_0792920
description ATP-binding cassette transporter, putative (EC:3.6.3.28)
nr
ID KDP34703.1
description hypothetical protein JCGZ_10908 [Jatropha curcas]
swissprot
ID Q2PCF1
description Pleiotropic drug resistance protein 2 OS=Nicotiana plumbaginifolia GN=PDR2 PE=2 SV=1
trembl
ID A0A067KIB1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10908 PE=4 SV=1
Gene Ontology
ID GO:0016020
description pleiotropic drug resistance protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001842_060 0.0 desease resistance Gene Name: ABC_trans_N hypothetical protein JCGZ_10908 [Jatropha curcas]
2 Hb_002030_170 0.1056908511 - - PREDICTED: calcium-transporting ATPase 1-like [Jatropha curcas]
3 Hb_002471_140 0.1287784139 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
4 Hb_002662_090 0.1303102557 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
5 Hb_000953_040 0.1451368653 - - hypothetical protein OsJ_19135 [Oryza sativa Japonica Group]
6 Hb_004631_080 0.1503528516 - - P3B-ATPase PH1 [Petunia x hybrida]
7 Hb_000345_340 0.1525403237 - - PREDICTED: DNA polymerase zeta catalytic subunit [Jatropha curcas]
8 Hb_002660_040 0.155149665 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
9 Hb_000421_020 0.1578635112 - - ascorbate peroxidase [Hevea brasiliensis]
10 Hb_029622_020 0.1585821294 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000866_090 0.1591360312 - - PREDICTED: U-box domain-containing protein 33-like isoform X3 [Jatropha curcas]
12 Hb_004286_030 0.1641320194 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
13 Hb_000313_370 0.1676401064 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_000622_280 0.1702023738 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
15 Hb_001195_020 0.1704485653 - - PREDICTED: ornithine carbamoyltransferase, chloroplastic [Jatropha curcas]
16 Hb_000130_080 0.1715874728 - - unnamed protein product [Vitis vinifera]
17 Hb_005186_090 0.1733746874 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_002375_050 0.1757863785 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
19 Hb_001369_160 0.1761949539 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
20 Hb_000836_610 0.1786355946 - - stem-specific protein TSJT1-like [Jatropha curcas]

Gene co-expression network

sample Hb_001842_060 Hb_001842_060 Hb_002030_170 Hb_002030_170 Hb_001842_060--Hb_002030_170 Hb_002471_140 Hb_002471_140 Hb_001842_060--Hb_002471_140 Hb_002662_090 Hb_002662_090 Hb_001842_060--Hb_002662_090 Hb_000953_040 Hb_000953_040 Hb_001842_060--Hb_000953_040 Hb_004631_080 Hb_004631_080 Hb_001842_060--Hb_004631_080 Hb_000345_340 Hb_000345_340 Hb_001842_060--Hb_000345_340 Hb_002030_170--Hb_004631_080 Hb_002660_040 Hb_002660_040 Hb_002030_170--Hb_002660_040 Hb_002272_230 Hb_002272_230 Hb_002030_170--Hb_002272_230 Hb_000313_370 Hb_000313_370 Hb_002030_170--Hb_000313_370 Hb_002030_170--Hb_002662_090 Hb_002471_140--Hb_000345_340 Hb_008667_060 Hb_008667_060 Hb_002471_140--Hb_008667_060 Hb_000059_130 Hb_000059_130 Hb_002471_140--Hb_000059_130 Hb_000866_090 Hb_000866_090 Hb_002471_140--Hb_000866_090 Hb_001251_060 Hb_001251_060 Hb_002471_140--Hb_001251_060 Hb_002477_120 Hb_002477_120 Hb_002471_140--Hb_002477_120 Hb_001369_160 Hb_001369_160 Hb_002662_090--Hb_001369_160 Hb_002928_180 Hb_002928_180 Hb_002662_090--Hb_002928_180 Hb_004286_030 Hb_004286_030 Hb_002662_090--Hb_004286_030 Hb_010174_190 Hb_010174_190 Hb_002662_090--Hb_010174_190 Hb_003894_100 Hb_003894_100 Hb_002662_090--Hb_003894_100 Hb_110567_010 Hb_110567_010 Hb_000953_040--Hb_110567_010 Hb_001195_020 Hb_001195_020 Hb_000953_040--Hb_001195_020 Hb_000953_040--Hb_002471_140 Hb_029622_020 Hb_029622_020 Hb_000953_040--Hb_029622_020 Hb_005504_030 Hb_005504_030 Hb_000953_040--Hb_005504_030 Hb_004631_080--Hb_002272_230 Hb_000347_110 Hb_000347_110 Hb_004631_080--Hb_000347_110 Hb_025526_080 Hb_025526_080 Hb_004631_080--Hb_025526_080 Hb_000173_260 Hb_000173_260 Hb_004631_080--Hb_000173_260 Hb_000345_340--Hb_008667_060 Hb_000271_120 Hb_000271_120 Hb_000345_340--Hb_000271_120 Hb_001080_140 Hb_001080_140 Hb_000345_340--Hb_001080_140 Hb_000345_340--Hb_000866_090 Hb_000345_340--Hb_000059_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0351743 0.337345 0.176634 0.0774487 0.0298488 0.0303267
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0194827 0.0229988 0.0294826 0.367254 0.0493496

CAGE analysis