Hb_003894_100

Information

Type -
Description -
Location Contig3894: 68246-73463
Sequence    

Annotation

kegg
ID rcu:RCOM_1612240
description DNA binding protein, putative
nr
ID XP_012083565.1
description PREDICTED: AT-hook motif nuclear-localized protein 1-like [Jatropha curcas]
swissprot
ID Q8VYJ2
description AT-hook motif nuclear-localized protein 1 OS=Arabidopsis thaliana GN=AHL1 PE=1 SV=1
trembl
ID A0A067K159
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14519 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-binding protein escarola

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39028: 68321-74202
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003894_100 0.0 - - PREDICTED: AT-hook motif nuclear-localized protein 1-like [Jatropha curcas]
2 Hb_001369_160 0.1261126123 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
3 Hb_002447_150 0.1268834521 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
4 Hb_008667_060 0.1284915604 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
5 Hb_000589_220 0.1293683751 desease resistance Gene Name: NB-ARC PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
6 Hb_002928_180 0.1378215745 - - catalase CAT1 [Manihot esculenta]
7 Hb_002122_080 0.1380545881 - - -
8 Hb_002662_090 0.138673186 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
9 Hb_000778_020 0.1461986605 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
10 Hb_002874_130 0.1466507291 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 9 [Jatropha curcas]
11 Hb_000465_260 0.1500020896 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
12 Hb_001675_010 0.1502805009 - - hypothetical protein TRIUR3_09961 [Triticum urartu]
13 Hb_001596_020 0.1503557976 - - hypothetical protein CICLE_v10014140mg [Citrus clementina]
14 Hb_004586_240 0.150433066 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
15 Hb_000216_020 0.1516575349 - - PREDICTED: benzaldehyde dehydrogenase (NAD(+))-like [Jatropha curcas]
16 Hb_001341_200 0.1519287147 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
17 Hb_000059_130 0.1544090874 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
18 Hb_009646_010 0.1551011874 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
19 Hb_000189_120 0.1559681113 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like isoform X5 [Jatropha curcas]
20 Hb_005181_180 0.1586547505 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003894_100 Hb_003894_100 Hb_001369_160 Hb_001369_160 Hb_003894_100--Hb_001369_160 Hb_002447_150 Hb_002447_150 Hb_003894_100--Hb_002447_150 Hb_008667_060 Hb_008667_060 Hb_003894_100--Hb_008667_060 Hb_000589_220 Hb_000589_220 Hb_003894_100--Hb_000589_220 Hb_002928_180 Hb_002928_180 Hb_003894_100--Hb_002928_180 Hb_002122_080 Hb_002122_080 Hb_003894_100--Hb_002122_080 Hb_000120_310 Hb_000120_310 Hb_001369_160--Hb_000120_310 Hb_001856_170 Hb_001856_170 Hb_001369_160--Hb_001856_170 Hb_002662_090 Hb_002662_090 Hb_001369_160--Hb_002662_090 Hb_001596_020 Hb_001596_020 Hb_001369_160--Hb_001596_020 Hb_001369_160--Hb_002447_150 Hb_000059_130 Hb_000059_130 Hb_002447_150--Hb_000059_130 Hb_000216_020 Hb_000216_020 Hb_002447_150--Hb_000216_020 Hb_002447_150--Hb_008667_060 Hb_115513_040 Hb_115513_040 Hb_002447_150--Hb_115513_040 Hb_008667_060--Hb_000059_130 Hb_002477_120 Hb_002477_120 Hb_008667_060--Hb_002477_120 Hb_000676_040 Hb_000676_040 Hb_008667_060--Hb_000676_040 Hb_002471_140 Hb_002471_140 Hb_008667_060--Hb_002471_140 Hb_002524_020 Hb_002524_020 Hb_008667_060--Hb_002524_020 Hb_000345_340 Hb_000345_340 Hb_008667_060--Hb_000345_340 Hb_000236_110 Hb_000236_110 Hb_000589_220--Hb_000236_110 Hb_013749_060 Hb_013749_060 Hb_000589_220--Hb_013749_060 Hb_000778_020 Hb_000778_020 Hb_000589_220--Hb_000778_020 Hb_001410_010 Hb_001410_010 Hb_000589_220--Hb_001410_010 Hb_057079_020 Hb_057079_020 Hb_000589_220--Hb_057079_020 Hb_000429_110 Hb_000429_110 Hb_002928_180--Hb_000429_110 Hb_002928_180--Hb_000236_110 Hb_002928_180--Hb_000778_020 Hb_002928_120 Hb_002928_120 Hb_002928_180--Hb_002928_120 Hb_010174_190 Hb_010174_190 Hb_002928_180--Hb_010174_190 Hb_002928_180--Hb_001410_010 Hb_003506_020 Hb_003506_020 Hb_002122_080--Hb_003506_020 Hb_007576_200 Hb_007576_200 Hb_002122_080--Hb_007576_200 Hb_000371_060 Hb_000371_060 Hb_002122_080--Hb_000371_060 Hb_000302_200 Hb_000302_200 Hb_002122_080--Hb_000302_200 Hb_002122_080--Hb_000059_130 Hb_002122_080--Hb_000216_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.59191 34.0308 8.79082 18.7674 2.93389 2.7013
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.75678 3.50407 0.762107 29.6473 7.48843

CAGE analysis