Hb_001856_170

Information

Type -
Description -
Location Contig1856: 224034-235752
Sequence    

Annotation

kegg
ID pop:POPTR_0017s13110g
description POPTRDRAFT_259430; hypothetical protein
nr
ID XP_012084841.1
description PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
swissprot
ID Q9FNU2
description ABC transporter B family member 25 OS=Oryza sativa subsp. japonica GN=OsABCB25 PE=2 SV=1
trembl
ID A0A067K4V3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19964 PE=3 SV=1
Gene Ontology
ID GO:0000325
description abc transporter b family member 25

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18165: 224499-231325 , PASA_asmbl_18166: 224499-230576
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001856_170 0.0 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
2 Hb_000120_310 0.092844155 - - Gibberellin 3-beta-dioxygenase, putative [Ricinus communis]
3 Hb_004586_240 0.1015886264 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
4 Hb_001369_160 0.1019935078 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
5 Hb_006831_080 0.1030271484 - - PREDICTED: uncharacterized protein LOC105642126 [Jatropha curcas]
6 Hb_001596_020 0.1030393614 - - hypothetical protein CICLE_v10014140mg [Citrus clementina]
7 Hb_000009_140 0.1295920109 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
8 Hb_005504_030 0.129698558 - - PREDICTED: somatic embryogenesis receptor kinase 2-like [Pyrus x bretschneideri]
9 Hb_000840_070 0.1302556701 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
10 Hb_002662_090 0.1386760841 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
11 Hb_033363_010 0.141811636 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
12 Hb_004631_110 0.1420896653 - - ring finger protein, putative [Ricinus communis]
13 Hb_000000_110 0.1468679613 - - hypothetical protein CISIN_1g0027772mg, partial [Citrus sinensis]
14 Hb_001832_210 0.1472598981 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
15 Hb_000465_260 0.1473042137 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
16 Hb_005694_180 0.152108547 - - PREDICTED: cytochrome b5 [Jatropha curcas]
17 Hb_000220_080 0.1534663143 - - kinase, putative [Ricinus communis]
18 Hb_000363_410 0.1558762272 - - hypothetical protein JCGZ_00955 [Jatropha curcas]
19 Hb_002447_150 0.1558886912 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
20 Hb_115513_040 0.1588379336 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001856_170 Hb_001856_170 Hb_000120_310 Hb_000120_310 Hb_001856_170--Hb_000120_310 Hb_004586_240 Hb_004586_240 Hb_001856_170--Hb_004586_240 Hb_001369_160 Hb_001369_160 Hb_001856_170--Hb_001369_160 Hb_006831_080 Hb_006831_080 Hb_001856_170--Hb_006831_080 Hb_001596_020 Hb_001596_020 Hb_001856_170--Hb_001596_020 Hb_000009_140 Hb_000009_140 Hb_001856_170--Hb_000009_140 Hb_000120_310--Hb_001369_160 Hb_001488_280 Hb_001488_280 Hb_000120_310--Hb_001488_280 Hb_000120_310--Hb_001596_020 Hb_002833_020 Hb_002833_020 Hb_000120_310--Hb_002833_020 Hb_000120_310--Hb_004586_240 Hb_005504_030 Hb_005504_030 Hb_004586_240--Hb_005504_030 Hb_004586_240--Hb_000009_140 Hb_004586_240--Hb_001369_160 Hb_004586_240--Hb_001596_020 Hb_002662_090 Hb_002662_090 Hb_001369_160--Hb_002662_090 Hb_001369_160--Hb_001596_020 Hb_002447_150 Hb_002447_150 Hb_001369_160--Hb_002447_150 Hb_003894_100 Hb_003894_100 Hb_001369_160--Hb_003894_100 Hb_006831_080--Hb_001596_020 Hb_006831_080--Hb_000120_310 Hb_006831_080--Hb_004586_240 Hb_001141_230 Hb_001141_230 Hb_006831_080--Hb_001141_230 Hb_001832_210 Hb_001832_210 Hb_006831_080--Hb_001832_210 Hb_001178_080 Hb_001178_080 Hb_001596_020--Hb_001178_080 Hb_000009_140--Hb_005504_030 Hb_033363_010 Hb_033363_010 Hb_000009_140--Hb_033363_010 Hb_000072_020 Hb_000072_020 Hb_000009_140--Hb_000072_020 Hb_009646_010 Hb_009646_010 Hb_000009_140--Hb_009646_010 Hb_010068_070 Hb_010068_070 Hb_000009_140--Hb_010068_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.75757 10.3325 7.06651 9.40625 1.34517 1.30679
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.917691 0.577689 0.412678 9.43089 1.77908

CAGE analysis