Hb_002447_150

Information

Type -
Description -
Location Contig2447: 121220-143423
Sequence    

Annotation

kegg
ID rcu:RCOM_0964340
description cinnamoyl-CoA reductase, putative (EC:1.1.1.219)
nr
ID XP_002517775.1
description cinnamoyl-CoA reductase, putative [Ricinus communis]
swissprot
ID Q500U8
description Tetraketide alpha-pyrone reductase 1 OS=Arabidopsis thaliana GN=TKPR1 PE=1 SV=1
trembl
ID B9RVK6
description Cinnamoyl-CoA reductase, putative OS=Ricinus communis GN=RCOM_0964340 PE=4 SV=1
Gene Ontology
ID GO:0016616
description cinnamoyl- reductase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25533: 133969-134478
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002447_150 0.0 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
2 Hb_000059_130 0.1181499556 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
3 Hb_000216_020 0.1200612763 - - PREDICTED: benzaldehyde dehydrogenase (NAD(+))-like [Jatropha curcas]
4 Hb_001369_160 0.1234825644 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
5 Hb_003894_100 0.1268834521 - - PREDICTED: AT-hook motif nuclear-localized protein 1-like [Jatropha curcas]
6 Hb_008667_060 0.1343627703 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
7 Hb_115513_040 0.1346073377 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000072_020 0.1367886512 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
9 Hb_033363_010 0.1383708555 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
10 Hb_002122_080 0.1404588984 - - -
11 Hb_001951_240 0.1421220532 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
12 Hb_000950_040 0.14234501 - - cation-transporting atpase plant, putative [Ricinus communis]
13 Hb_000732_230 0.1427188403 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
14 Hb_002471_140 0.1439281897 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
15 Hb_004631_110 0.1444540768 - - ring finger protein, putative [Ricinus communis]
16 Hb_003506_020 0.1460344199 - - PREDICTED: uncharacterized protein LOC105125881 isoform X1 [Populus euphratica]
17 Hb_000133_090 0.1471638293 - - PREDICTED: uncharacterized protein LOC105629320 [Jatropha curcas]
18 Hb_000371_060 0.1475604276 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
19 Hb_000997_340 0.1483482493 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
20 Hb_000473_150 0.1486023567 - - PREDICTED: pullulanase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002447_150 Hb_002447_150 Hb_000059_130 Hb_000059_130 Hb_002447_150--Hb_000059_130 Hb_000216_020 Hb_000216_020 Hb_002447_150--Hb_000216_020 Hb_001369_160 Hb_001369_160 Hb_002447_150--Hb_001369_160 Hb_003894_100 Hb_003894_100 Hb_002447_150--Hb_003894_100 Hb_008667_060 Hb_008667_060 Hb_002447_150--Hb_008667_060 Hb_115513_040 Hb_115513_040 Hb_002447_150--Hb_115513_040 Hb_000059_130--Hb_000216_020 Hb_000059_130--Hb_008667_060 Hb_000473_150 Hb_000473_150 Hb_000059_130--Hb_000473_150 Hb_000805_190 Hb_000805_190 Hb_000059_130--Hb_000805_190 Hb_000069_780 Hb_000069_780 Hb_000059_130--Hb_000069_780 Hb_000371_060 Hb_000371_060 Hb_000059_130--Hb_000371_060 Hb_003506_020 Hb_003506_020 Hb_000216_020--Hb_003506_020 Hb_000216_020--Hb_000371_060 Hb_000270_230 Hb_000270_230 Hb_000216_020--Hb_000270_230 Hb_000216_020--Hb_008667_060 Hb_000216_020--Hb_000069_780 Hb_000120_310 Hb_000120_310 Hb_001369_160--Hb_000120_310 Hb_001856_170 Hb_001856_170 Hb_001369_160--Hb_001856_170 Hb_002662_090 Hb_002662_090 Hb_001369_160--Hb_002662_090 Hb_001596_020 Hb_001596_020 Hb_001369_160--Hb_001596_020 Hb_001369_160--Hb_003894_100 Hb_003894_100--Hb_008667_060 Hb_000589_220 Hb_000589_220 Hb_003894_100--Hb_000589_220 Hb_002928_180 Hb_002928_180 Hb_003894_100--Hb_002928_180 Hb_002122_080 Hb_002122_080 Hb_003894_100--Hb_002122_080 Hb_002477_120 Hb_002477_120 Hb_008667_060--Hb_002477_120 Hb_000676_040 Hb_000676_040 Hb_008667_060--Hb_000676_040 Hb_002471_140 Hb_002471_140 Hb_008667_060--Hb_002471_140 Hb_002524_020 Hb_002524_020 Hb_008667_060--Hb_002524_020 Hb_000345_340 Hb_000345_340 Hb_008667_060--Hb_000345_340 Hb_000732_230 Hb_000732_230 Hb_115513_040--Hb_000732_230 Hb_083078_010 Hb_083078_010 Hb_115513_040--Hb_083078_010 Hb_000227_320 Hb_000227_320 Hb_115513_040--Hb_000227_320 Hb_000950_040 Hb_000950_040 Hb_115513_040--Hb_000950_040 Hb_003050_150 Hb_003050_150 Hb_115513_040--Hb_003050_150 Hb_001205_180 Hb_001205_180 Hb_115513_040--Hb_001205_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.64991 7.0899 2.45457 3.61824 1.26849 0.586212
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.997852 0.224348 0.261886 4.36235 2.07096

CAGE analysis