Hb_000676_040

Information

Type -
Description -
Location Contig676: 25027-27328
Sequence    

Annotation

kegg
ID pop:POPTR_0007s13320g
description POPTRDRAFT_219372; hypothetical protein
nr
ID XP_002310264.2
description hypothetical protein POPTR_0007s13320g [Populus trichocarpa]
swissprot
ID Q9P6Q3
description Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1
trembl
ID B9HF89
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s13320g PE=3 SV=2
Gene Ontology
ID GO:0005524
description mitochondrial chaperone bcs1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53541: 25995-26181 , PASA_asmbl_53542: 26201-26979
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000676_040 0.0 - - hypothetical protein POPTR_0007s13320g [Populus trichocarpa]
2 Hb_002524_020 0.0879015597 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
3 Hb_000270_230 0.0909506728 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
4 Hb_000371_060 0.0966046629 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
5 Hb_001257_100 0.0989748382 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
6 Hb_008667_060 0.0994074505 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
7 Hb_000059_130 0.1002744767 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
8 Hb_001268_310 0.1019577143 - - -
9 Hb_000617_190 0.1029238538 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase [Jatropha curcas]
10 Hb_001488_040 0.1039802719 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
11 Hb_000856_020 0.1111251143 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
12 Hb_007576_200 0.1114980327 - - amino acid transporter, putative [Ricinus communis]
13 Hb_003544_070 0.1150618618 - - conserved hypothetical protein [Ricinus communis]
14 Hb_062416_010 0.1160610746 - - PREDICTED: UPF0202 protein At1g10490 [Jatropha curcas]
15 Hb_000302_200 0.118016012 - - ornithine cyclodeaminase, putative [Ricinus communis]
16 Hb_000473_150 0.1183429256 - - PREDICTED: pullulanase 1, chloroplastic [Jatropha curcas]
17 Hb_007765_030 0.1202197595 - - PREDICTED: neutral ceramidase [Jatropha curcas]
18 Hb_001195_350 0.1207949611 - - hypothetical protein JCGZ_04423 [Jatropha curcas]
19 Hb_001862_110 0.1213819261 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
20 Hb_002387_040 0.1214692568 - - protein transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000676_040 Hb_000676_040 Hb_002524_020 Hb_002524_020 Hb_000676_040--Hb_002524_020 Hb_000270_230 Hb_000270_230 Hb_000676_040--Hb_000270_230 Hb_000371_060 Hb_000371_060 Hb_000676_040--Hb_000371_060 Hb_001257_100 Hb_001257_100 Hb_000676_040--Hb_001257_100 Hb_008667_060 Hb_008667_060 Hb_000676_040--Hb_008667_060 Hb_000059_130 Hb_000059_130 Hb_000676_040--Hb_000059_130 Hb_002524_020--Hb_000371_060 Hb_062416_010 Hb_062416_010 Hb_002524_020--Hb_062416_010 Hb_001414_040 Hb_001414_040 Hb_002524_020--Hb_001414_040 Hb_001268_310 Hb_001268_310 Hb_002524_020--Hb_001268_310 Hb_007765_030 Hb_007765_030 Hb_002524_020--Hb_007765_030 Hb_000069_780 Hb_000069_780 Hb_000270_230--Hb_000069_780 Hb_000856_020 Hb_000856_020 Hb_000270_230--Hb_000856_020 Hb_000270_230--Hb_001257_100 Hb_006054_030 Hb_006054_030 Hb_000270_230--Hb_006054_030 Hb_000941_080 Hb_000941_080 Hb_000270_230--Hb_000941_080 Hb_000371_060--Hb_001414_040 Hb_001259_120 Hb_001259_120 Hb_000371_060--Hb_001259_120 Hb_001195_350 Hb_001195_350 Hb_000371_060--Hb_001195_350 Hb_000371_060--Hb_001257_100 Hb_000371_060--Hb_000059_130 Hb_000671_080 Hb_000671_080 Hb_001257_100--Hb_000671_080 Hb_000926_150 Hb_000926_150 Hb_001257_100--Hb_000926_150 Hb_026198_060 Hb_026198_060 Hb_001257_100--Hb_026198_060 Hb_002812_010 Hb_002812_010 Hb_001257_100--Hb_002812_010 Hb_000649_250 Hb_000649_250 Hb_001257_100--Hb_000649_250 Hb_002119_090 Hb_002119_090 Hb_001257_100--Hb_002119_090 Hb_008667_060--Hb_000059_130 Hb_002477_120 Hb_002477_120 Hb_008667_060--Hb_002477_120 Hb_002471_140 Hb_002471_140 Hb_008667_060--Hb_002471_140 Hb_008667_060--Hb_002524_020 Hb_000345_340 Hb_000345_340 Hb_008667_060--Hb_000345_340 Hb_000216_020 Hb_000216_020 Hb_000059_130--Hb_000216_020 Hb_000473_150 Hb_000473_150 Hb_000059_130--Hb_000473_150 Hb_000805_190 Hb_000805_190 Hb_000059_130--Hb_000805_190 Hb_000059_130--Hb_000069_780
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.37335 8.20447 2.85249 4.18003 1.03032 1.95056
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.98816 1.54339 0.827059 4.2465 2.80796

CAGE analysis