Hb_001268_310

Information

Type -
Description -
Location Contig1268: 297718-300652
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08119: 298451-298574 , PASA_asmbl_08120: 299447-301207
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001268_310 0.0 - - -
2 Hb_001862_110 0.0909287738 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
3 Hb_000926_150 0.0926937819 - - PREDICTED: splicing factor, suppressor of white-apricot homolog isoform X1 [Jatropha curcas]
4 Hb_001257_100 0.0966228971 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
5 Hb_002524_020 0.100783158 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
6 Hb_000631_120 0.1010478304 - - hypothetical protein CISIN_1g0431902mg, partial [Citrus sinensis]
7 Hb_000676_040 0.1019577143 - - hypothetical protein POPTR_0007s13320g [Populus trichocarpa]
8 Hb_062416_010 0.106939822 - - PREDICTED: UPF0202 protein At1g10490 [Jatropha curcas]
9 Hb_000671_080 0.1088346064 - - PREDICTED: 5'-adenylylsulfate reductase-like 4 [Jatropha curcas]
10 Hb_001488_040 0.1114217143 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
11 Hb_002812_010 0.1137550766 - - PREDICTED: chitin elicitor receptor kinase 1 isoform X1 [Jatropha curcas]
12 Hb_000059_020 0.1169141994 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
13 Hb_004994_090 0.1171778829 - - PREDICTED: uncharacterized protein LOC105643033 isoform X2 [Jatropha curcas]
14 Hb_000856_020 0.1177121126 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
15 Hb_001408_110 0.1178113498 - - hypothetical protein EUGRSUZ_I02762 [Eucalyptus grandis]
16 Hb_007054_040 0.1179031452 - - PREDICTED: protein RST1 [Jatropha curcas]
17 Hb_000170_240 0.1187647461 - - PREDICTED: auxilin-related protein 1 [Jatropha curcas]
18 Hb_000617_190 0.1187835509 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase [Jatropha curcas]
19 Hb_026198_060 0.1188803282 - - PREDICTED: calcium-dependent protein kinase 11 [Jatropha curcas]
20 Hb_024650_080 0.1189526059 - - PREDICTED: BTB/POZ domain-containing protein At3g09030 [Jatropha curcas]

Gene co-expression network

sample Hb_001268_310 Hb_001268_310 Hb_001862_110 Hb_001862_110 Hb_001268_310--Hb_001862_110 Hb_000926_150 Hb_000926_150 Hb_001268_310--Hb_000926_150 Hb_001257_100 Hb_001257_100 Hb_001268_310--Hb_001257_100 Hb_002524_020 Hb_002524_020 Hb_001268_310--Hb_002524_020 Hb_000631_120 Hb_000631_120 Hb_001268_310--Hb_000631_120 Hb_000676_040 Hb_000676_040 Hb_001268_310--Hb_000676_040 Hb_007054_040 Hb_007054_040 Hb_001862_110--Hb_007054_040 Hb_001541_250 Hb_001541_250 Hb_001862_110--Hb_001541_250 Hb_009486_160 Hb_009486_160 Hb_001862_110--Hb_009486_160 Hb_001488_040 Hb_001488_040 Hb_001862_110--Hb_001488_040 Hb_001862_110--Hb_000926_150 Hb_002812_010 Hb_002812_010 Hb_001862_110--Hb_002812_010 Hb_116349_130 Hb_116349_130 Hb_000926_150--Hb_116349_130 Hb_000035_100 Hb_000035_100 Hb_000926_150--Hb_000035_100 Hb_000856_300 Hb_000856_300 Hb_000926_150--Hb_000856_300 Hb_000926_150--Hb_001257_100 Hb_024650_080 Hb_024650_080 Hb_000926_150--Hb_024650_080 Hb_000373_170 Hb_000373_170 Hb_000926_150--Hb_000373_170 Hb_000671_080 Hb_000671_080 Hb_001257_100--Hb_000671_080 Hb_026198_060 Hb_026198_060 Hb_001257_100--Hb_026198_060 Hb_001257_100--Hb_002812_010 Hb_000649_250 Hb_000649_250 Hb_001257_100--Hb_000649_250 Hb_002119_090 Hb_002119_090 Hb_001257_100--Hb_002119_090 Hb_000371_060 Hb_000371_060 Hb_002524_020--Hb_000371_060 Hb_002524_020--Hb_000676_040 Hb_062416_010 Hb_062416_010 Hb_002524_020--Hb_062416_010 Hb_001414_040 Hb_001414_040 Hb_002524_020--Hb_001414_040 Hb_007765_030 Hb_007765_030 Hb_002524_020--Hb_007765_030 Hb_000940_200 Hb_000940_200 Hb_000631_120--Hb_000940_200 Hb_000862_040 Hb_000862_040 Hb_000631_120--Hb_000862_040 Hb_000631_120--Hb_007054_040 Hb_001935_140 Hb_001935_140 Hb_000631_120--Hb_001935_140 Hb_000363_120 Hb_000363_120 Hb_000631_120--Hb_000363_120 Hb_000631_120--Hb_001862_110 Hb_000270_230 Hb_000270_230 Hb_000676_040--Hb_000270_230 Hb_000676_040--Hb_000371_060 Hb_000676_040--Hb_001257_100 Hb_008667_060 Hb_008667_060 Hb_000676_040--Hb_008667_060 Hb_000059_130 Hb_000059_130 Hb_000676_040--Hb_000059_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.89765 11.4108 3.75609 6.30604 2.5655 2.77411
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.44363 3.92828 1.14644 5.86996 4.58218

CAGE analysis