Hb_062416_010

Information

Type -
Description -
Location Contig62416: 1507-4375
Sequence    

Annotation

kegg
ID vvi:100259524
description UPF0202 protein At1g10490
nr
ID XP_012075258.1
description PREDICTED: UPF0202 protein At1g10490 [Jatropha curcas]
swissprot
ID Q9XIK4
description UPF0202 protein At1g10490 OS=Arabidopsis thaliana GN=At1g10490 PE=2 SV=2
trembl
ID A0A067KTX0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09428 PE=4 SV=1
Gene Ontology
ID GO:0016740
description upf0202 protein at1g10490

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_062416_010 0.0 - - PREDICTED: UPF0202 protein At1g10490 [Jatropha curcas]
2 Hb_000631_120 0.0898814006 - - hypothetical protein CISIN_1g0431902mg, partial [Citrus sinensis]
3 Hb_000059_020 0.0916993424 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
4 Hb_002524_020 0.0980604045 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
5 Hb_008948_140 0.1007952316 - - PREDICTED: nuclear pore complex protein NUP205 [Jatropha curcas]
6 Hb_007765_030 0.1024508811 - - PREDICTED: neutral ceramidase [Jatropha curcas]
7 Hb_001259_120 0.1028321336 - - hypothetical protein EUGRSUZ_C043222, partial [Eucalyptus grandis]
8 Hb_001167_050 0.1060161511 - - PREDICTED: uncharacterized protein LOC105648014 [Jatropha curcas]
9 Hb_001268_310 0.106939822 - - -
10 Hb_001257_100 0.1084570174 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
11 Hb_000940_200 0.1091445592 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
12 Hb_001031_090 0.1099248401 - - PREDICTED: translational activator GCN1 [Jatropha curcas]
13 Hb_006910_060 0.1108916805 - - PREDICTED: MACPF domain-containing protein At1g14780-like [Jatropha curcas]
14 Hb_000371_060 0.1125464889 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
15 Hb_000260_660 0.1130409316 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004994_090 0.1134834239 - - PREDICTED: uncharacterized protein LOC105643033 isoform X2 [Jatropha curcas]
17 Hb_001341_160 0.1135051948 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X2 [Jatropha curcas]
18 Hb_000009_330 0.1155025166 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
19 Hb_000676_040 0.1160610746 - - hypothetical protein POPTR_0007s13320g [Populus trichocarpa]
20 Hb_000197_030 0.1162255046 - - hypothetical protein RCOM_1447500 [Ricinus communis]

Gene co-expression network

sample Hb_062416_010 Hb_062416_010 Hb_000631_120 Hb_000631_120 Hb_062416_010--Hb_000631_120 Hb_000059_020 Hb_000059_020 Hb_062416_010--Hb_000059_020 Hb_002524_020 Hb_002524_020 Hb_062416_010--Hb_002524_020 Hb_008948_140 Hb_008948_140 Hb_062416_010--Hb_008948_140 Hb_007765_030 Hb_007765_030 Hb_062416_010--Hb_007765_030 Hb_001259_120 Hb_001259_120 Hb_062416_010--Hb_001259_120 Hb_000940_200 Hb_000940_200 Hb_000631_120--Hb_000940_200 Hb_000862_040 Hb_000862_040 Hb_000631_120--Hb_000862_040 Hb_007054_040 Hb_007054_040 Hb_000631_120--Hb_007054_040 Hb_001935_140 Hb_001935_140 Hb_000631_120--Hb_001935_140 Hb_000363_120 Hb_000363_120 Hb_000631_120--Hb_000363_120 Hb_001862_110 Hb_001862_110 Hb_000631_120--Hb_001862_110 Hb_000059_020--Hb_000862_040 Hb_000059_020--Hb_000940_200 Hb_005568_040 Hb_005568_040 Hb_000059_020--Hb_005568_040 Hb_000700_060 Hb_000700_060 Hb_000059_020--Hb_000700_060 Hb_000197_030 Hb_000197_030 Hb_000059_020--Hb_000197_030 Hb_000009_330 Hb_000009_330 Hb_000059_020--Hb_000009_330 Hb_000371_060 Hb_000371_060 Hb_002524_020--Hb_000371_060 Hb_000676_040 Hb_000676_040 Hb_002524_020--Hb_000676_040 Hb_001414_040 Hb_001414_040 Hb_002524_020--Hb_001414_040 Hb_001268_310 Hb_001268_310 Hb_002524_020--Hb_001268_310 Hb_002524_020--Hb_007765_030 Hb_000479_240 Hb_000479_240 Hb_008948_140--Hb_000479_240 Hb_000856_300 Hb_000856_300 Hb_008948_140--Hb_000856_300 Hb_001341_160 Hb_001341_160 Hb_008948_140--Hb_001341_160 Hb_008948_140--Hb_000862_040 Hb_001723_010 Hb_001723_010 Hb_008948_140--Hb_001723_010 Hb_000926_150 Hb_000926_150 Hb_008948_140--Hb_000926_150 Hb_002217_220 Hb_002217_220 Hb_007765_030--Hb_002217_220 Hb_000260_660 Hb_000260_660 Hb_007765_030--Hb_000260_660 Hb_007765_030--Hb_001414_040 Hb_007765_030--Hb_001341_160 Hb_000220_120 Hb_000220_120 Hb_007765_030--Hb_000220_120 Hb_000834_230 Hb_000834_230 Hb_007765_030--Hb_000834_230 Hb_000010_420 Hb_000010_420 Hb_001259_120--Hb_000010_420 Hb_026198_060 Hb_026198_060 Hb_001259_120--Hb_026198_060 Hb_004645_070 Hb_004645_070 Hb_001259_120--Hb_004645_070 Hb_001257_100 Hb_001257_100 Hb_001259_120--Hb_001257_100 Hb_002005_030 Hb_002005_030 Hb_001259_120--Hb_002005_030 Hb_001167_050 Hb_001167_050 Hb_001259_120--Hb_001167_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.60842 29.0548 11.3812 18.4816 6.82592 13.0794
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.18035 8.83434 4.46221 21.5119 8.02565

CAGE analysis