Hb_116349_130

Information

Type transcription factor
Description TF Family: Orphans
Location Contig116349: 72688-83989
Sequence    

Annotation

kegg
ID rcu:RCOM_0699610
description hypothetical protein
nr
ID XP_012092008.1
description PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Jatropha curcas]
swissprot
ID O04539
description Paired amphipathic helix protein Sin3-like 4 OS=Arabidopsis thaliana GN=SNL4 PE=3 SV=3
trembl
ID B9S2H7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0699610 PE=4 SV=1
Gene Ontology
ID GO:0006355
description paired amphipathic helix protein sin3-like 4 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05059: 72701-82630 , PASA_asmbl_05060: 72960-73492 , PASA_asmbl_05061: 83618-83768
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116349_130 0.0 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Jatropha curcas]
2 Hb_000035_100 0.0602570667 - - nucleic acid binding protein, putative [Ricinus communis]
3 Hb_000926_150 0.0638422289 - - PREDICTED: splicing factor, suppressor of white-apricot homolog isoform X1 [Jatropha curcas]
4 Hb_004551_020 0.078996061 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
5 Hb_003939_060 0.0802492057 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005408_030 0.0820808581 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
7 Hb_000428_030 0.0829823147 - - hypothetical protein RCOM_1520720 [Ricinus communis]
8 Hb_009302_030 0.0841158715 - - hypothetical protein RCOM_1176340 [Ricinus communis]
9 Hb_005701_050 0.0848416322 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
10 Hb_000676_330 0.0857960496 - - protein with unknown function [Ricinus communis]
11 Hb_000331_100 0.0863625764 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
12 Hb_000664_120 0.0898898273 - - PREDICTED: SART-1 family protein DOT2 isoform X1 [Jatropha curcas]
13 Hb_170077_010 0.0903479646 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
14 Hb_000373_170 0.0905577159 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
15 Hb_000996_020 0.090615523 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
16 Hb_000934_210 0.0916557868 - - suppressor of ty, putative [Ricinus communis]
17 Hb_000110_350 0.0917325675 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
18 Hb_001904_030 0.0918007901 - - PREDICTED: importin-5 [Jatropha curcas]
19 Hb_003929_210 0.0924102612 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
20 Hb_000085_210 0.093766959 - - DNA topoisomerase type I, putative [Ricinus communis]

Gene co-expression network

sample Hb_116349_130 Hb_116349_130 Hb_000035_100 Hb_000035_100 Hb_116349_130--Hb_000035_100 Hb_000926_150 Hb_000926_150 Hb_116349_130--Hb_000926_150 Hb_004551_020 Hb_004551_020 Hb_116349_130--Hb_004551_020 Hb_003939_060 Hb_003939_060 Hb_116349_130--Hb_003939_060 Hb_005408_030 Hb_005408_030 Hb_116349_130--Hb_005408_030 Hb_000428_030 Hb_000428_030 Hb_116349_130--Hb_000428_030 Hb_033312_130 Hb_033312_130 Hb_000035_100--Hb_033312_130 Hb_000030_140 Hb_000030_140 Hb_000035_100--Hb_000030_140 Hb_008165_020 Hb_008165_020 Hb_000035_100--Hb_008165_020 Hb_000173_190 Hb_000173_190 Hb_000035_100--Hb_000173_190 Hb_003929_210 Hb_003929_210 Hb_000035_100--Hb_003929_210 Hb_000926_150--Hb_000035_100 Hb_000856_300 Hb_000856_300 Hb_000926_150--Hb_000856_300 Hb_001257_100 Hb_001257_100 Hb_000926_150--Hb_001257_100 Hb_024650_080 Hb_024650_080 Hb_000926_150--Hb_024650_080 Hb_000373_170 Hb_000373_170 Hb_000926_150--Hb_000373_170 Hb_012490_010 Hb_012490_010 Hb_004551_020--Hb_012490_010 Hb_004551_020--Hb_000428_030 Hb_008686_020 Hb_008686_020 Hb_004551_020--Hb_008686_020 Hb_002078_470 Hb_002078_470 Hb_004551_020--Hb_002078_470 Hb_007012_040 Hb_007012_040 Hb_004551_020--Hb_007012_040 Hb_004551_020--Hb_000035_100 Hb_003939_060--Hb_003929_210 Hb_009302_030 Hb_009302_030 Hb_003939_060--Hb_009302_030 Hb_000110_350 Hb_000110_350 Hb_003939_060--Hb_000110_350 Hb_000996_020 Hb_000996_020 Hb_003939_060--Hb_000996_020 Hb_001904_030 Hb_001904_030 Hb_003939_060--Hb_001904_030 Hb_002007_110 Hb_002007_110 Hb_003939_060--Hb_002007_110 Hb_000009_410 Hb_000009_410 Hb_005408_030--Hb_000009_410 Hb_001648_020 Hb_001648_020 Hb_005408_030--Hb_001648_020 Hb_001951_170 Hb_001951_170 Hb_005408_030--Hb_001951_170 Hb_005186_040 Hb_005186_040 Hb_005408_030--Hb_005186_040 Hb_011021_050 Hb_011021_050 Hb_005408_030--Hb_011021_050 Hb_000934_210 Hb_000934_210 Hb_005408_030--Hb_000934_210 Hb_000260_760 Hb_000260_760 Hb_000428_030--Hb_000260_760 Hb_000428_030--Hb_002078_470 Hb_000331_100 Hb_000331_100 Hb_000428_030--Hb_000331_100 Hb_000428_030--Hb_008165_020 Hb_000200_110 Hb_000200_110 Hb_000428_030--Hb_000200_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.93184 18.2147 9.28758 8.91668 7.34187 5.53485
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.96837 6.92796 3.95678 9.55972 12.3416

CAGE analysis