Hb_006054_030

Information

Type -
Description -
Location Contig6054: 62836-64158
Sequence    

Annotation

kegg
ID rcu:RCOM_0879910
description lung seven transmembrane receptor, putative
nr
ID XP_012074848.1
description PREDICTED: protein GPR107-like [Jatropha curcas]
swissprot
ID Q8BUV8
description Protein GPR107 OS=Mus musculus GN=Gpr107 PE=2 SV=2
trembl
ID A0A067KH45
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08999 PE=4 SV=1
Gene Ontology
ID GO:0009507
description protein gpr107-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006054_030 0.0 - - PREDICTED: protein GPR107-like [Jatropha curcas]
2 Hb_000941_080 0.0709391978 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X3 [Populus euphratica]
3 Hb_001369_780 0.0801937499 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000069_780 0.0821304316 - - atpob1, putative [Ricinus communis]
5 Hb_001410_130 0.0829429632 - - hypothetical protein POPTR_0001s10880g [Populus trichocarpa]
6 Hb_000270_230 0.0931049344 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
7 Hb_000460_060 0.1001976821 - - importin beta-1, putative [Ricinus communis]
8 Hb_001009_090 0.1006878078 - - CDK protein [Hevea brasiliensis]
9 Hb_003752_120 0.1032128822 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
10 Hb_003605_220 0.1086784435 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
11 Hb_000134_340 0.1117987978 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 5 [Jatropha curcas]
12 Hb_138585_100 0.1125428678 - - PREDICTED: uncharacterized protein LOC105648740 [Jatropha curcas]
13 Hb_001133_010 0.114971378 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000608_280 0.1163140404 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
15 Hb_004994_300 0.1163330922 - - synaptotagmin, putative [Ricinus communis]
16 Hb_001911_010 0.118255177 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
17 Hb_002915_070 0.1189261413 - - PREDICTED: protein TRANSPARENT TESTA GLABRA 1 [Jatropha curcas]
18 Hb_002119_090 0.1199172807 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
19 Hb_103788_010 0.1204955938 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
20 Hb_000186_200 0.1228171252 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]

Gene co-expression network

sample Hb_006054_030 Hb_006054_030 Hb_000941_080 Hb_000941_080 Hb_006054_030--Hb_000941_080 Hb_001369_780 Hb_001369_780 Hb_006054_030--Hb_001369_780 Hb_000069_780 Hb_000069_780 Hb_006054_030--Hb_000069_780 Hb_001410_130 Hb_001410_130 Hb_006054_030--Hb_001410_130 Hb_000270_230 Hb_000270_230 Hb_006054_030--Hb_000270_230 Hb_000460_060 Hb_000460_060 Hb_006054_030--Hb_000460_060 Hb_000941_080--Hb_001410_130 Hb_001911_010 Hb_001911_010 Hb_000941_080--Hb_001911_010 Hb_001009_090 Hb_001009_090 Hb_000941_080--Hb_001009_090 Hb_002119_090 Hb_002119_090 Hb_000941_080--Hb_002119_090 Hb_000941_080--Hb_000270_230 Hb_001369_780--Hb_000069_780 Hb_000608_280 Hb_000608_280 Hb_001369_780--Hb_000608_280 Hb_001369_780--Hb_001009_090 Hb_001369_780--Hb_001410_130 Hb_001369_780--Hb_000270_230 Hb_000069_780--Hb_000270_230 Hb_000059_130 Hb_000059_130 Hb_000069_780--Hb_000059_130 Hb_002387_040 Hb_002387_040 Hb_000069_780--Hb_002387_040 Hb_003752_120 Hb_003752_120 Hb_000069_780--Hb_003752_120 Hb_001410_130--Hb_001009_090 Hb_001410_130--Hb_001911_010 Hb_001410_130--Hb_002119_090 Hb_044653_020 Hb_044653_020 Hb_001410_130--Hb_044653_020 Hb_000856_020 Hb_000856_020 Hb_000270_230--Hb_000856_020 Hb_000676_040 Hb_000676_040 Hb_000270_230--Hb_000676_040 Hb_001257_100 Hb_001257_100 Hb_000270_230--Hb_001257_100 Hb_003605_220 Hb_003605_220 Hb_000460_060--Hb_003605_220 Hb_002387_070 Hb_002387_070 Hb_000460_060--Hb_002387_070 Hb_000460_060--Hb_044653_020 Hb_000460_060--Hb_001410_130 Hb_000460_060--Hb_000941_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
48.6322 268.508 83.4146 143.429 58.2178 46.5158
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.0191 24.5626 46.8111 55.4466 57.3628

CAGE analysis