Hb_001369_780

Information

Type -
Description -
Location Contig1369: 620880-624049
Sequence    

Annotation

kegg
ID rcu:RCOM_1498960
description hypothetical protein
nr
ID XP_002510907.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8VYS5
description Protein trichome birefringence-like 18 OS=Arabidopsis thaliana GN=TBL18 PE=2 SV=1
trembl
ID B9R9N2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1498960 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10228: 620612-625132 , PASA_asmbl_10229: 620635-624920 , PASA_asmbl_10230: 622346-622924
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_780 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006054_030 0.0801937499 - - PREDICTED: protein GPR107-like [Jatropha curcas]
3 Hb_000069_780 0.0833250134 - - atpob1, putative [Ricinus communis]
4 Hb_000608_280 0.0982279018 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
5 Hb_001009_090 0.1027880886 - - CDK protein [Hevea brasiliensis]
6 Hb_001410_130 0.1065341895 - - hypothetical protein POPTR_0001s10880g [Populus trichocarpa]
7 Hb_000270_230 0.109778475 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
8 Hb_000941_080 0.1169567271 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X3 [Populus euphratica]
9 Hb_001911_010 0.1197141351 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
10 Hb_001257_100 0.1213510682 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
11 Hb_000261_280 0.1220609537 - - BnaA10g23810D [Brassica napus]
12 Hb_003849_220 0.1231259279 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
13 Hb_003752_120 0.1235989086 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
14 Hb_000200_170 0.1257238627 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Populus euphratica]
15 Hb_000523_030 0.1262915543 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
16 Hb_000163_230 0.1280058285 - - Phytochrome A-associated F-box protein, putative [Ricinus communis]
17 Hb_000186_200 0.128088957 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
18 Hb_000205_240 0.1281459154 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_002387_040 0.1281616512 - - protein transporter, putative [Ricinus communis]
20 Hb_003777_130 0.1292441043 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]

Gene co-expression network

sample Hb_001369_780 Hb_001369_780 Hb_006054_030 Hb_006054_030 Hb_001369_780--Hb_006054_030 Hb_000069_780 Hb_000069_780 Hb_001369_780--Hb_000069_780 Hb_000608_280 Hb_000608_280 Hb_001369_780--Hb_000608_280 Hb_001009_090 Hb_001009_090 Hb_001369_780--Hb_001009_090 Hb_001410_130 Hb_001410_130 Hb_001369_780--Hb_001410_130 Hb_000270_230 Hb_000270_230 Hb_001369_780--Hb_000270_230 Hb_000941_080 Hb_000941_080 Hb_006054_030--Hb_000941_080 Hb_006054_030--Hb_000069_780 Hb_006054_030--Hb_001410_130 Hb_006054_030--Hb_000270_230 Hb_000460_060 Hb_000460_060 Hb_006054_030--Hb_000460_060 Hb_000069_780--Hb_000270_230 Hb_000059_130 Hb_000059_130 Hb_000069_780--Hb_000059_130 Hb_002387_040 Hb_002387_040 Hb_000069_780--Hb_002387_040 Hb_003752_120 Hb_003752_120 Hb_000069_780--Hb_003752_120 Hb_000134_340 Hb_000134_340 Hb_000608_280--Hb_000134_340 Hb_000608_280--Hb_001009_090 Hb_004917_040 Hb_004917_040 Hb_000608_280--Hb_004917_040 Hb_001376_010 Hb_001376_010 Hb_000608_280--Hb_001376_010 Hb_002248_130 Hb_002248_130 Hb_000608_280--Hb_002248_130 Hb_001009_090--Hb_001410_130 Hb_004526_010 Hb_004526_010 Hb_001009_090--Hb_004526_010 Hb_000163_230 Hb_000163_230 Hb_001009_090--Hb_000163_230 Hb_001009_090--Hb_000941_080 Hb_005649_090 Hb_005649_090 Hb_001009_090--Hb_005649_090 Hb_000186_200 Hb_000186_200 Hb_001009_090--Hb_000186_200 Hb_001410_130--Hb_000941_080 Hb_001911_010 Hb_001911_010 Hb_001410_130--Hb_001911_010 Hb_002119_090 Hb_002119_090 Hb_001410_130--Hb_002119_090 Hb_044653_020 Hb_044653_020 Hb_001410_130--Hb_044653_020 Hb_000856_020 Hb_000856_020 Hb_000270_230--Hb_000856_020 Hb_000676_040 Hb_000676_040 Hb_000270_230--Hb_000676_040 Hb_001257_100 Hb_001257_100 Hb_000270_230--Hb_001257_100 Hb_000270_230--Hb_000941_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.4846 38.8724 17.0221 24.7503 8.77717 7.3705
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.09899 7.46306 6.00251 8.63501 9.7625

CAGE analysis