Hb_000120_310

Information

Type -
Description -
Location Contig120: 228536-229926
Sequence    

Annotation

kegg
ID rcu:RCOM_0613740
description Gibberellin 3-beta-dioxygenase, putative (EC:1.14.11.15)
nr
ID XP_002528538.1
description Gibberellin 3-beta-dioxygenase, putative [Ricinus communis]
swissprot
ID Q7XKU5
description 2-oxoglutarate-dependent dioxygenase DAO OS=Oryza sativa subsp. japonica GN=DAO PE=2 SV=2
trembl
ID B9SRB9
description Gibberellin 3-beta-dioxygenase, putative OS=Ricinus communis GN=RCOM_0613740 PE=3 SV=1
Gene Ontology
ID GO:0016707
description 2-oxoglutarate-dependent dioxygenase dao-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06107: 228543-229954
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_310 0.0 - - Gibberellin 3-beta-dioxygenase, putative [Ricinus communis]
2 Hb_001856_170 0.092844155 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
3 Hb_001369_160 0.0969418475 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
4 Hb_001488_280 0.1045036067 - - hypothetical protein JCGZ_19947 [Jatropha curcas]
5 Hb_001596_020 0.1091572807 - - hypothetical protein CICLE_v10014140mg [Citrus clementina]
6 Hb_002833_020 0.1103743535 desease resistance Gene Name: LRR_4 PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
7 Hb_004586_240 0.1159595852 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
8 Hb_115513_040 0.1176454706 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006831_080 0.1189040522 - - PREDICTED: uncharacterized protein LOC105642126 [Jatropha curcas]
10 Hb_033234_010 0.1193016215 desease resistance Gene Name: LRR_8 Disease resistance protein RPP8 [Theobroma cacao]
11 Hb_005504_030 0.1202269446 - - PREDICTED: somatic embryogenesis receptor kinase 2-like [Pyrus x bretschneideri]
12 Hb_000220_080 0.1225486678 - - kinase, putative [Ricinus communis]
13 Hb_000085_380 0.1228027129 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004656_010 0.1272772572 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
15 Hb_000072_020 0.128048644 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
16 Hb_002660_040 0.1289936629 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
17 Hb_001832_210 0.1316892303 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
18 Hb_001522_040 0.1321246222 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
19 Hb_000417_280 0.1331081127 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001008_110 0.1331135396 - - -

Gene co-expression network

sample Hb_000120_310 Hb_000120_310 Hb_001856_170 Hb_001856_170 Hb_000120_310--Hb_001856_170 Hb_001369_160 Hb_001369_160 Hb_000120_310--Hb_001369_160 Hb_001488_280 Hb_001488_280 Hb_000120_310--Hb_001488_280 Hb_001596_020 Hb_001596_020 Hb_000120_310--Hb_001596_020 Hb_002833_020 Hb_002833_020 Hb_000120_310--Hb_002833_020 Hb_004586_240 Hb_004586_240 Hb_000120_310--Hb_004586_240 Hb_001856_170--Hb_004586_240 Hb_001856_170--Hb_001369_160 Hb_006831_080 Hb_006831_080 Hb_001856_170--Hb_006831_080 Hb_001856_170--Hb_001596_020 Hb_000009_140 Hb_000009_140 Hb_001856_170--Hb_000009_140 Hb_002662_090 Hb_002662_090 Hb_001369_160--Hb_002662_090 Hb_001369_160--Hb_001596_020 Hb_002447_150 Hb_002447_150 Hb_001369_160--Hb_002447_150 Hb_003894_100 Hb_003894_100 Hb_001369_160--Hb_003894_100 Hb_009898_030 Hb_009898_030 Hb_001488_280--Hb_009898_030 Hb_001488_280--Hb_002833_020 Hb_000417_280 Hb_000417_280 Hb_001488_280--Hb_000417_280 Hb_000574_370 Hb_000574_370 Hb_001488_280--Hb_000574_370 Hb_005880_010 Hb_005880_010 Hb_001488_280--Hb_005880_010 Hb_001596_020--Hb_006831_080 Hb_001596_020--Hb_004586_240 Hb_001178_080 Hb_001178_080 Hb_001596_020--Hb_001178_080 Hb_001008_110 Hb_001008_110 Hb_002833_020--Hb_001008_110 Hb_002833_020--Hb_000417_280 Hb_000100_210 Hb_000100_210 Hb_002833_020--Hb_000100_210 Hb_000085_380 Hb_000085_380 Hb_002833_020--Hb_000085_380 Hb_042202_020 Hb_042202_020 Hb_002833_020--Hb_042202_020 Hb_005504_030 Hb_005504_030 Hb_004586_240--Hb_005504_030 Hb_004586_240--Hb_000009_140 Hb_004586_240--Hb_001369_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.41453 14.6121 11.176 11.8799 1.64905 2.27558
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.68764 0.54091 0.887971 15.5494 5.2687

CAGE analysis