Hb_001178_080

Information

Type -
Description -
Location Contig1178: 124074-129629
Sequence    

Annotation

kegg
ID rcu:RCOM_0014200
description serine/threonine protein kinase, putative (EC:2.7.11.1)
nr
ID XP_012066457.1
description PREDICTED: protein kinase PVPK-1 [Jatropha curcas]
swissprot
ID Q9LFA2
description Serine/threonine-protein kinase KIPK OS=Arabidopsis thaliana GN=KIPK PE=1 SV=1
trembl
ID A0A067L6A5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23653 PE=4 SV=1
Gene Ontology
ID GO:0004674
description kcbp-interacting protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05373: 128313-128430 , PASA_asmbl_05374: 128605-128693
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001178_080 0.0 - - PREDICTED: protein kinase PVPK-1 [Jatropha curcas]
2 Hb_005016_020 0.1192635118 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
3 Hb_012727_010 0.1200004928 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
4 Hb_000000_110 0.12110708 - - hypothetical protein CISIN_1g0027772mg, partial [Citrus sinensis]
5 Hb_001596_020 0.1301271514 - - hypothetical protein CICLE_v10014140mg [Citrus clementina]
6 Hb_006949_060 0.1347895178 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
7 Hb_017159_010 0.1394708162 - - -
8 Hb_001832_210 0.1415250949 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
9 Hb_001522_040 0.1431590835 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
10 Hb_000085_380 0.1462404727 - - conserved hypothetical protein [Ricinus communis]
11 Hb_160405_010 0.1463970229 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
12 Hb_000363_180 0.1468998687 - - PREDICTED: uncharacterized protein LOC105633052 [Jatropha curcas]
13 Hb_000220_080 0.1482268471 - - kinase, putative [Ricinus communis]
14 Hb_002685_030 0.1495855495 - - PREDICTED: protein SMG7L [Jatropha curcas]
15 Hb_001898_020 0.1499029874 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
16 Hb_000997_340 0.1502593883 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
17 Hb_002324_040 0.1505480628 - - PREDICTED: subtilisin-like protease SBT1.6 [Jatropha curcas]
18 Hb_005694_180 0.1510578222 - - PREDICTED: cytochrome b5 [Jatropha curcas]
19 Hb_000465_260 0.1532103696 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
20 Hb_000056_280 0.153409248 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001178_080 Hb_001178_080 Hb_005016_020 Hb_005016_020 Hb_001178_080--Hb_005016_020 Hb_012727_010 Hb_012727_010 Hb_001178_080--Hb_012727_010 Hb_000000_110 Hb_000000_110 Hb_001178_080--Hb_000000_110 Hb_001596_020 Hb_001596_020 Hb_001178_080--Hb_001596_020 Hb_006949_060 Hb_006949_060 Hb_001178_080--Hb_006949_060 Hb_017159_010 Hb_017159_010 Hb_001178_080--Hb_017159_010 Hb_005016_020--Hb_000000_110 Hb_001898_020 Hb_001898_020 Hb_005016_020--Hb_001898_020 Hb_160405_010 Hb_160405_010 Hb_005016_020--Hb_160405_010 Hb_005016_020--Hb_012727_010 Hb_000220_080 Hb_000220_080 Hb_005016_020--Hb_000220_080 Hb_002324_040 Hb_002324_040 Hb_012727_010--Hb_002324_040 Hb_003025_150 Hb_003025_150 Hb_012727_010--Hb_003025_150 Hb_003647_040 Hb_003647_040 Hb_012727_010--Hb_003647_040 Hb_001832_210 Hb_001832_210 Hb_012727_010--Hb_001832_210 Hb_003579_040 Hb_003579_040 Hb_012727_010--Hb_003579_040 Hb_000000_110--Hb_001832_210 Hb_000000_110--Hb_000220_080 Hb_000000_120 Hb_000000_120 Hb_000000_110--Hb_000000_120 Hb_002685_030 Hb_002685_030 Hb_000000_110--Hb_002685_030 Hb_006831_080 Hb_006831_080 Hb_001596_020--Hb_006831_080 Hb_001856_170 Hb_001856_170 Hb_001596_020--Hb_001856_170 Hb_000120_310 Hb_000120_310 Hb_001596_020--Hb_000120_310 Hb_001369_160 Hb_001369_160 Hb_001596_020--Hb_001369_160 Hb_004586_240 Hb_004586_240 Hb_001596_020--Hb_004586_240 Hb_010407_030 Hb_010407_030 Hb_006949_060--Hb_010407_030 Hb_000227_320 Hb_000227_320 Hb_006949_060--Hb_000227_320 Hb_132840_030 Hb_132840_030 Hb_006949_060--Hb_132840_030 Hb_000950_040 Hb_000950_040 Hb_006949_060--Hb_000950_040 Hb_001009_150 Hb_001009_150 Hb_006949_060--Hb_001009_150 Hb_002316_170 Hb_002316_170 Hb_006949_060--Hb_002316_170 Hb_002250_050 Hb_002250_050 Hb_017159_010--Hb_002250_050 Hb_001754_060 Hb_001754_060 Hb_017159_010--Hb_001754_060 Hb_000200_170 Hb_000200_170 Hb_017159_010--Hb_000200_170 Hb_001255_010 Hb_001255_010 Hb_017159_010--Hb_001255_010 Hb_002849_070 Hb_002849_070 Hb_017159_010--Hb_002849_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.612264 5.70365 3.26928 8.49449 0.341324 1.65989
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.439688 0.306467 0.341122 4.19636 2.11416

CAGE analysis