Hb_000000_110

Information

Type -
Description -
Location Contig0: 184274-186548
Sequence    

Annotation

kegg
ID cic:CICLE_v10000230mg
description hypothetical protein
nr
ID KDO84392.1
description hypothetical protein CISIN_1g0027772mg, partial [Citrus sinensis]
swissprot
ID Q9NV70
description Exocyst complex component 1 OS=Homo sapiens GN=EXOC1 PE=1 SV=4
trembl
ID A0A067GXQ3
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0027772mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00012: 184675-184934
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000000_110 0.0 - - hypothetical protein CISIN_1g0027772mg, partial [Citrus sinensis]
2 Hb_005016_020 0.0863688773 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
3 Hb_001832_210 0.1105332063 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
4 Hb_000220_080 0.1159693482 - - kinase, putative [Ricinus communis]
5 Hb_001178_080 0.12110708 - - PREDICTED: protein kinase PVPK-1 [Jatropha curcas]
6 Hb_000000_120 0.1304337827 - - hypothetical protein EUGRSUZ_A004731, partial [Eucalyptus grandis]
7 Hb_002685_030 0.1366459402 - - PREDICTED: protein SMG7L [Jatropha curcas]
8 Hb_160405_010 0.1381446383 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
9 Hb_003506_020 0.1439767389 - - PREDICTED: uncharacterized protein LOC105125881 isoform X1 [Populus euphratica]
10 Hb_001195_420 0.1445643302 - - PREDICTED: uncharacterized protein LOC105633774 isoform X4 [Jatropha curcas]
11 Hb_001898_020 0.1446141318 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
12 Hb_012727_010 0.1450903349 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
13 Hb_000025_400 0.1453326049 - - PREDICTED: uncharacterized protein LOC105110770 [Populus euphratica]
14 Hb_001856_170 0.1468679613 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
15 Hb_001009_150 0.1473925245 - - Glyceraldehyde-3-phosphate dehydrogenase [Gossypium arboreum]
16 Hb_028077_020 0.1514256997 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000363_180 0.1525351358 - - PREDICTED: uncharacterized protein LOC105633052 [Jatropha curcas]
18 Hb_003647_040 0.1538637982 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000056_280 0.1546223367 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
20 Hb_000950_040 0.1550488243 - - cation-transporting atpase plant, putative [Ricinus communis]

Gene co-expression network

sample Hb_000000_110 Hb_000000_110 Hb_005016_020 Hb_005016_020 Hb_000000_110--Hb_005016_020 Hb_001832_210 Hb_001832_210 Hb_000000_110--Hb_001832_210 Hb_000220_080 Hb_000220_080 Hb_000000_110--Hb_000220_080 Hb_001178_080 Hb_001178_080 Hb_000000_110--Hb_001178_080 Hb_000000_120 Hb_000000_120 Hb_000000_110--Hb_000000_120 Hb_002685_030 Hb_002685_030 Hb_000000_110--Hb_002685_030 Hb_001898_020 Hb_001898_020 Hb_005016_020--Hb_001898_020 Hb_005016_020--Hb_001178_080 Hb_160405_010 Hb_160405_010 Hb_005016_020--Hb_160405_010 Hb_012727_010 Hb_012727_010 Hb_005016_020--Hb_012727_010 Hb_005016_020--Hb_000220_080 Hb_001071_060 Hb_001071_060 Hb_001832_210--Hb_001071_060 Hb_000197_230 Hb_000197_230 Hb_001832_210--Hb_000197_230 Hb_000997_340 Hb_000997_340 Hb_001832_210--Hb_000997_340 Hb_001832_210--Hb_000220_080 Hb_000085_380 Hb_000085_380 Hb_001832_210--Hb_000085_380 Hb_000220_080--Hb_000000_120 Hb_002316_170 Hb_002316_170 Hb_000220_080--Hb_002316_170 Hb_000072_020 Hb_000072_020 Hb_000220_080--Hb_000072_020 Hb_001009_150 Hb_001009_150 Hb_000220_080--Hb_001009_150 Hb_006949_060 Hb_006949_060 Hb_000220_080--Hb_006949_060 Hb_001178_080--Hb_012727_010 Hb_001596_020 Hb_001596_020 Hb_001178_080--Hb_001596_020 Hb_001178_080--Hb_006949_060 Hb_017159_010 Hb_017159_010 Hb_001178_080--Hb_017159_010 Hb_003506_020 Hb_003506_020 Hb_000000_120--Hb_003506_020 Hb_005970_010 Hb_005970_010 Hb_000000_120--Hb_005970_010 Hb_002072_010 Hb_002072_010 Hb_000000_120--Hb_002072_010 Hb_000000_120--Hb_002316_170 Hb_003125_180 Hb_003125_180 Hb_000000_120--Hb_003125_180 Hb_000950_040 Hb_000950_040 Hb_002685_030--Hb_000950_040 Hb_002740_040 Hb_002740_040 Hb_002685_030--Hb_002740_040 Hb_001522_040 Hb_001522_040 Hb_002685_030--Hb_001522_040 Hb_000732_230 Hb_000732_230 Hb_002685_030--Hb_000732_230 Hb_052117_010 Hb_052117_010 Hb_002685_030--Hb_052117_010 Hb_014720_030 Hb_014720_030 Hb_002685_030--Hb_014720_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.01851 7.3771 3.34973 11.2782 1.43686 1.66481
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.333568 0.589998 0.583401 6.54116 2.32741

CAGE analysis