Hb_000429_110

Information

Type transcription factor
Description TF Family: C2H2
Location Contig429: 124563-127353
Sequence    

Annotation

kegg
ID pop:POPTR_0016s05310g
description POPTRDRAFT_777162; zinc finger family protein
nr
ID XP_011033300.1
description PREDICTED: zinc finger protein WIP2-like [Populus euphratica]
swissprot
ID Q9SVY1
description Zinc finger protein WIP2 OS=Arabidopsis thaliana GN=WIP2 PE=1 SV=1
trembl
ID B9II50
description Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0016s05310g PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein transparent testa 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42096: 124639-127135
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000429_110 0.0 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2-like [Populus euphratica]
2 Hb_002928_180 0.107873573 - - catalase CAT1 [Manihot esculenta]
3 Hb_052764_080 0.1294411963 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 isoform X1 [Jatropha curcas]
4 Hb_001259_100 0.1348758799 - - chloride channel-like family protein [Populus trichocarpa]
5 Hb_002928_120 0.1365522357 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
6 Hb_010174_190 0.1391375887 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
7 Hb_001355_070 0.1393329055 - - P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative isoform 2 [Theobroma cacao]
8 Hb_001148_040 0.1435503966 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
9 Hb_073171_010 0.1469661437 - - PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
10 Hb_010381_110 0.1470361238 - - PRA1 family protein [Theobroma cacao]
11 Hb_003453_030 0.1515124253 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
12 Hb_001898_060 0.1592432846 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001195_500 0.1592821122 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
14 Hb_000608_020 0.1596806955 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
15 Hb_001401_070 0.1642505567 - - glycogenin, putative [Ricinus communis]
16 Hb_001341_200 0.1664870866 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
17 Hb_022501_020 0.1672945523 - - AMP dependent CoA ligase, putative [Ricinus communis]
18 Hb_002662_090 0.1682439652 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
19 Hb_001558_070 0.1683912896 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
20 Hb_000236_110 0.1691526607 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000429_110 Hb_000429_110 Hb_002928_180 Hb_002928_180 Hb_000429_110--Hb_002928_180 Hb_052764_080 Hb_052764_080 Hb_000429_110--Hb_052764_080 Hb_001259_100 Hb_001259_100 Hb_000429_110--Hb_001259_100 Hb_002928_120 Hb_002928_120 Hb_000429_110--Hb_002928_120 Hb_010174_190 Hb_010174_190 Hb_000429_110--Hb_010174_190 Hb_001355_070 Hb_001355_070 Hb_000429_110--Hb_001355_070 Hb_000236_110 Hb_000236_110 Hb_002928_180--Hb_000236_110 Hb_000778_020 Hb_000778_020 Hb_002928_180--Hb_000778_020 Hb_002928_180--Hb_002928_120 Hb_002928_180--Hb_010174_190 Hb_001410_010 Hb_001410_010 Hb_002928_180--Hb_001410_010 Hb_073171_010 Hb_073171_010 Hb_052764_080--Hb_073171_010 Hb_052764_080--Hb_001259_100 Hb_000977_090 Hb_000977_090 Hb_052764_080--Hb_000977_090 Hb_005183_200 Hb_005183_200 Hb_052764_080--Hb_005183_200 Hb_000720_210 Hb_000720_210 Hb_052764_080--Hb_000720_210 Hb_001259_100--Hb_073171_010 Hb_001259_100--Hb_005183_200 Hb_004044_030 Hb_004044_030 Hb_001259_100--Hb_004044_030 Hb_010381_110 Hb_010381_110 Hb_001259_100--Hb_010381_110 Hb_000793_040 Hb_000793_040 Hb_002928_120--Hb_000793_040 Hb_001021_030 Hb_001021_030 Hb_002928_120--Hb_001021_030 Hb_025432_010 Hb_025432_010 Hb_002928_120--Hb_025432_010 Hb_002928_120--Hb_000236_110 Hb_010174_190--Hb_025432_010 Hb_064985_010 Hb_064985_010 Hb_010174_190--Hb_064985_010 Hb_001008_110 Hb_001008_110 Hb_010174_190--Hb_001008_110 Hb_022501_020 Hb_022501_020 Hb_010174_190--Hb_022501_020 Hb_068332_010 Hb_068332_010 Hb_010174_190--Hb_068332_010 Hb_001195_500 Hb_001195_500 Hb_001355_070--Hb_001195_500 Hb_001355_070--Hb_002928_180 Hb_000172_050 Hb_000172_050 Hb_001355_070--Hb_000172_050 Hb_002662_090 Hb_002662_090 Hb_001355_070--Hb_002662_090 Hb_001355_070--Hb_010174_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.263096 12.5869 1.80384 9.03677 0.58696 0.433559
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.681981 0.945301 0.431434 9.2336 1.28092

CAGE analysis