Hb_001355_070

Information

Type -
Description -
Location Contig1355: 67086-76859
Sequence    

Annotation

kegg
ID pop:POPTR_0005s12200g
description hypothetical protein
nr
ID XP_007046847.1
description P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative isoform 2 [Theobroma cacao]
swissprot
ID Q54DY9
description Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum GN=bcsl1b PE=3 SV=1
trembl
ID A0A061DFI6
description P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative isoform 2 OS=Theobroma cacao GN=TCM_000316 PE=3 SV=1
Gene Ontology
ID GO:0005524
description mitochondrial chaperone bcs1-b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09881: 71702-72441 , PASA_asmbl_09882: 72535-72912 , PASA_asmbl_09883: 72932-73069 , PASA_asmbl_09884: 73914-76848 , PASA_asmbl_09885: 74224-75943
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001355_070 0.0 - - P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative isoform 2 [Theobroma cacao]
2 Hb_001195_500 0.1335252192 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
3 Hb_002928_180 0.1360320064 - - catalase CAT1 [Manihot esculenta]
4 Hb_000429_110 0.1393329055 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2-like [Populus euphratica]
5 Hb_000172_050 0.1526504351 - - PREDICTED: uncharacterized protein LOC105650611 [Jatropha curcas]
6 Hb_002662_090 0.1534203118 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
7 Hb_010174_190 0.1545256552 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
8 Hb_000977_090 0.156464252 - - hypothetical protein POPTR_0010s18550g [Populus trichocarpa]
9 Hb_000953_040 0.1667458714 - - hypothetical protein OsJ_19135 [Oryza sativa Japonica Group]
10 Hb_004007_120 0.1683106761 - - PREDICTED: calcium-transporting ATPase 2, plasma membrane-type isoform X1 [Populus euphratica]
11 Hb_006935_010 0.17467284 - - PREDICTED: inositol transporter 1 isoform X1 [Gossypium raimondii]
12 Hb_000840_070 0.176472262 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
13 Hb_017857_010 0.1776984607 - - -
14 Hb_004631_110 0.1818160333 - - ring finger protein, putative [Ricinus communis]
15 Hb_068332_010 0.1824104249 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
16 Hb_000056_280 0.182895892 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
17 Hb_001369_160 0.1845331794 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
18 Hb_052764_080 0.1850266189 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 isoform X1 [Jatropha curcas]
19 Hb_001856_170 0.1855066977 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
20 Hb_003894_100 0.1860054129 - - PREDICTED: AT-hook motif nuclear-localized protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_001355_070 Hb_001355_070 Hb_001195_500 Hb_001195_500 Hb_001355_070--Hb_001195_500 Hb_002928_180 Hb_002928_180 Hb_001355_070--Hb_002928_180 Hb_000429_110 Hb_000429_110 Hb_001355_070--Hb_000429_110 Hb_000172_050 Hb_000172_050 Hb_001355_070--Hb_000172_050 Hb_002662_090 Hb_002662_090 Hb_001355_070--Hb_002662_090 Hb_010174_190 Hb_010174_190 Hb_001355_070--Hb_010174_190 Hb_000007_160 Hb_000007_160 Hb_001195_500--Hb_000007_160 Hb_001377_500 Hb_001377_500 Hb_001195_500--Hb_001377_500 Hb_001791_010 Hb_001791_010 Hb_001195_500--Hb_001791_010 Hb_001148_040 Hb_001148_040 Hb_001195_500--Hb_001148_040 Hb_004631_110 Hb_004631_110 Hb_001195_500--Hb_004631_110 Hb_002928_180--Hb_000429_110 Hb_000236_110 Hb_000236_110 Hb_002928_180--Hb_000236_110 Hb_000778_020 Hb_000778_020 Hb_002928_180--Hb_000778_020 Hb_002928_120 Hb_002928_120 Hb_002928_180--Hb_002928_120 Hb_002928_180--Hb_010174_190 Hb_001410_010 Hb_001410_010 Hb_002928_180--Hb_001410_010 Hb_052764_080 Hb_052764_080 Hb_000429_110--Hb_052764_080 Hb_001259_100 Hb_001259_100 Hb_000429_110--Hb_001259_100 Hb_000429_110--Hb_002928_120 Hb_000429_110--Hb_010174_190 Hb_000853_100 Hb_000853_100 Hb_000172_050--Hb_000853_100 Hb_006615_160 Hb_006615_160 Hb_000172_050--Hb_006615_160 Hb_017857_010 Hb_017857_010 Hb_000172_050--Hb_017857_010 Hb_014720_050 Hb_014720_050 Hb_000172_050--Hb_014720_050 Hb_000094_120 Hb_000094_120 Hb_000172_050--Hb_000094_120 Hb_001369_160 Hb_001369_160 Hb_002662_090--Hb_001369_160 Hb_001842_060 Hb_001842_060 Hb_002662_090--Hb_001842_060 Hb_002662_090--Hb_002928_180 Hb_004286_030 Hb_004286_030 Hb_002662_090--Hb_004286_030 Hb_002662_090--Hb_010174_190 Hb_003894_100 Hb_003894_100 Hb_002662_090--Hb_003894_100 Hb_025432_010 Hb_025432_010 Hb_010174_190--Hb_025432_010 Hb_064985_010 Hb_064985_010 Hb_010174_190--Hb_064985_010 Hb_001008_110 Hb_001008_110 Hb_010174_190--Hb_001008_110 Hb_022501_020 Hb_022501_020 Hb_010174_190--Hb_022501_020 Hb_068332_010 Hb_068332_010 Hb_010174_190--Hb_068332_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.379238 9.72616 2.86679 5.16827 0.616776 0.363717
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.118097 1.36029 0.438175 5.6084 0.923499

CAGE analysis