Hb_001791_010

Information

Type -
Description -
Location Contig1791: 21181-24889
Sequence    

Annotation

kegg
ID rcu:RCOM_0989530
description ATP binding protein, putative (EC:2.7.11.16)
nr
ID XP_012088621.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g63710 [Jatropha curcas]
swissprot
ID Q8W4S5
description Probable LRR receptor-like serine/threonine-protein kinase At5g63710 OS=Arabidopsis thaliana GN=At5g63710 PE=2 SV=1
trembl
ID A0A067JIR1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27155 PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at5g63710

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17321: 23762-24767
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001791_010 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g63710 [Jatropha curcas]
2 Hb_001195_500 0.1389117587 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
3 Hb_003371_210 0.1516159581 - - unnamed protein product [Vitis vinifera]
4 Hb_098160_010 0.1548670624 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
5 Hb_009510_050 0.1617682633 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000808_160 0.1631568616 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
7 Hb_004032_250 0.1671601204 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000003_760 0.1680716912 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA26-like [Jatropha curcas]
9 Hb_158696_010 0.170502433 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
10 Hb_001699_050 0.1721994834 transcription factor TF Family: MYB hypothetical protein POPTR_0005s11410g [Populus trichocarpa]
11 Hb_003602_090 0.1724550517 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
12 Hb_060237_010 0.1727071932 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002239_030 0.1733718615 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
14 Hb_000995_010 0.1738517415 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
15 Hb_022206_030 0.17881627 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
16 Hb_019040_010 0.179621633 - - PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
17 Hb_020967_010 0.1803080961 - - -
18 Hb_005695_020 0.1803360581 - - PREDICTED: low affinity sulfate transporter 3 [Jatropha curcas]
19 Hb_024357_010 0.1806543071 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
20 Hb_064047_010 0.180702674 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001791_010 Hb_001791_010 Hb_001195_500 Hb_001195_500 Hb_001791_010--Hb_001195_500 Hb_003371_210 Hb_003371_210 Hb_001791_010--Hb_003371_210 Hb_098160_010 Hb_098160_010 Hb_001791_010--Hb_098160_010 Hb_009510_050 Hb_009510_050 Hb_001791_010--Hb_009510_050 Hb_000808_160 Hb_000808_160 Hb_001791_010--Hb_000808_160 Hb_004032_250 Hb_004032_250 Hb_001791_010--Hb_004032_250 Hb_000007_160 Hb_000007_160 Hb_001195_500--Hb_000007_160 Hb_001377_500 Hb_001377_500 Hb_001195_500--Hb_001377_500 Hb_001355_070 Hb_001355_070 Hb_001195_500--Hb_001355_070 Hb_001148_040 Hb_001148_040 Hb_001195_500--Hb_001148_040 Hb_004631_110 Hb_004631_110 Hb_001195_500--Hb_004631_110 Hb_003371_260 Hb_003371_260 Hb_003371_210--Hb_003371_260 Hb_064047_010 Hb_064047_010 Hb_003371_210--Hb_064047_010 Hb_066320_010 Hb_066320_010 Hb_003371_210--Hb_066320_010 Hb_010381_110 Hb_010381_110 Hb_003371_210--Hb_010381_110 Hb_169620_010 Hb_169620_010 Hb_003371_210--Hb_169620_010 Hb_001405_060 Hb_001405_060 Hb_098160_010--Hb_001405_060 Hb_007574_050 Hb_007574_050 Hb_098160_010--Hb_007574_050 Hb_002234_200 Hb_002234_200 Hb_098160_010--Hb_002234_200 Hb_000363_110 Hb_000363_110 Hb_098160_010--Hb_000363_110 Hb_005282_010 Hb_005282_010 Hb_098160_010--Hb_005282_010 Hb_001898_010 Hb_001898_010 Hb_098160_010--Hb_001898_010 Hb_003602_090 Hb_003602_090 Hb_009510_050--Hb_003602_090 Hb_006615_180 Hb_006615_180 Hb_009510_050--Hb_006615_180 Hb_082870_010 Hb_082870_010 Hb_009510_050--Hb_082870_010 Hb_117127_010 Hb_117127_010 Hb_009510_050--Hb_117127_010 Hb_000723_060 Hb_000723_060 Hb_009510_050--Hb_000723_060 Hb_017604_020 Hb_017604_020 Hb_009510_050--Hb_017604_020 Hb_002571_010 Hb_002571_010 Hb_000808_160--Hb_002571_010 Hb_000808_160--Hb_017604_020 Hb_000522_130 Hb_000522_130 Hb_000808_160--Hb_000522_130 Hb_000094_010 Hb_000094_010 Hb_000808_160--Hb_000094_010 Hb_000976_340 Hb_000976_340 Hb_000808_160--Hb_000976_340 Hb_001699_050 Hb_001699_050 Hb_000808_160--Hb_001699_050 Hb_002324_050 Hb_002324_050 Hb_004032_250--Hb_002324_050 Hb_004032_250--Hb_001699_050 Hb_002324_040 Hb_002324_040 Hb_004032_250--Hb_002324_040 Hb_004032_250--Hb_064047_010 Hb_004282_040 Hb_004282_040 Hb_004032_250--Hb_004282_040 Hb_004032_250--Hb_010381_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.32032 22.9264 3.65233 12.0963 0.0807857 0.89316
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.970706 1.03849 0.0569243 5.52675 1.64681

CAGE analysis