Hb_007574_050

Information

Type -
Description -
Location Contig7574: 47866-49806
Sequence    

Annotation

kegg
ID rcu:RCOM_0797340
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_012077281.1
description PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
swissprot
ID Q9M9C5
description Probable leucine-rich repeat receptor-like protein kinase At1g68400 OS=Arabidopsis thaliana GN=At1g68400 PE=2 SV=1
trembl
ID A0A067KQJ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07665 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable leucine-rich repeat receptor-like protein kinase at1g68400

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57080: 47661-50199
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007574_050 0.0 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
2 Hb_098160_010 0.1125374102 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
3 Hb_001898_010 0.1154510856 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
4 Hb_005375_070 0.117286193 transcription factor TF Family: MYB-related PREDICTED: protein LHY [Jatropha curcas]
5 Hb_002936_030 0.1190066479 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
6 Hb_000402_030 0.1202932796 - - PREDICTED: cysteine-rich receptor-like protein kinase 2 [Jatropha curcas]
7 Hb_001405_060 0.1212472537 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 4-like [Jatropha curcas]
8 Hb_046109_010 0.1225714378 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
9 Hb_005000_050 0.123668682 - - PREDICTED: tetraspanin-2 [Jatropha curcas]
10 Hb_033053_010 0.1237002189 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
11 Hb_017857_010 0.1254762567 - - -
12 Hb_000610_060 0.1274367131 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]
13 Hb_004712_160 0.1303004834 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
14 Hb_164926_050 0.1316300303 - - PREDICTED: subtilisin-like protease SBT3.5 [Jatropha curcas]
15 Hb_002234_200 0.1392191519 - - PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]
16 Hb_005282_010 0.1439707605 - - PREDICTED: probable xyloglucan glycosyltransferase 12 [Populus euphratica]
17 Hb_000363_110 0.1448317663 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 21 [Jatropha curcas]
18 Hb_000451_040 0.1449553101 - - conserved hypothetical protein [Ricinus communis]
19 Hb_013607_010 0.1450878684 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]
20 Hb_001247_160 0.1507631612 - - s-adenosylmethionine synthetase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007574_050 Hb_007574_050 Hb_098160_010 Hb_098160_010 Hb_007574_050--Hb_098160_010 Hb_001898_010 Hb_001898_010 Hb_007574_050--Hb_001898_010 Hb_005375_070 Hb_005375_070 Hb_007574_050--Hb_005375_070 Hb_002936_030 Hb_002936_030 Hb_007574_050--Hb_002936_030 Hb_000402_030 Hb_000402_030 Hb_007574_050--Hb_000402_030 Hb_001405_060 Hb_001405_060 Hb_007574_050--Hb_001405_060 Hb_098160_010--Hb_001405_060 Hb_002234_200 Hb_002234_200 Hb_098160_010--Hb_002234_200 Hb_000363_110 Hb_000363_110 Hb_098160_010--Hb_000363_110 Hb_005282_010 Hb_005282_010 Hb_098160_010--Hb_005282_010 Hb_098160_010--Hb_001898_010 Hb_001898_010--Hb_005375_070 Hb_001898_010--Hb_000402_030 Hb_004712_160 Hb_004712_160 Hb_001898_010--Hb_004712_160 Hb_009476_110 Hb_009476_110 Hb_001898_010--Hb_009476_110 Hb_005375_070--Hb_000402_030 Hb_017857_010 Hb_017857_010 Hb_005375_070--Hb_017857_010 Hb_005000_050 Hb_005000_050 Hb_005375_070--Hb_005000_050 Hb_002343_020 Hb_002343_020 Hb_005375_070--Hb_002343_020 Hb_149484_010 Hb_149484_010 Hb_005375_070--Hb_149484_010 Hb_005048_120 Hb_005048_120 Hb_002936_030--Hb_005048_120 Hb_001247_160 Hb_001247_160 Hb_002936_030--Hb_001247_160 Hb_002936_030--Hb_005282_010 Hb_003078_070 Hb_003078_070 Hb_002936_030--Hb_003078_070 Hb_012272_010 Hb_012272_010 Hb_002936_030--Hb_012272_010 Hb_000402_030--Hb_002343_020 Hb_005814_010 Hb_005814_010 Hb_000402_030--Hb_005814_010 Hb_000402_030--Hb_149484_010 Hb_001405_060--Hb_005282_010 Hb_001405_060--Hb_002234_200 Hb_002849_110 Hb_002849_110 Hb_001405_060--Hb_002849_110 Hb_000373_250 Hb_000373_250 Hb_001405_060--Hb_000373_250 Hb_003633_150 Hb_003633_150 Hb_001405_060--Hb_003633_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.533248 14.5309 7.62165 6.99049 0.585227 0.646215
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.222625 0.136237 0 2.82079 1.51799

CAGE analysis