Hb_098160_010

Information

Type desease resistance
Description Gene Name: TIR
Location Contig98160: 1090-4380
Sequence    

Annotation

kegg
ID rcu:RCOM_1045320
description TMV resistance protein N, putative
nr
ID XP_012071295.1
description PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID A0A067L5B8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00225 PE=4 SV=1
Gene Ontology
ID GO:0005515
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64410: 1052-4774 , PASA_asmbl_64411: 1018-4774
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_098160_010 0.0 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
2 Hb_001405_060 0.0936016993 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 4-like [Jatropha curcas]
3 Hb_007574_050 0.1125374102 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
4 Hb_002234_200 0.1145469251 - - PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]
5 Hb_000363_110 0.1152820689 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 21 [Jatropha curcas]
6 Hb_005282_010 0.11573897 - - PREDICTED: probable xyloglucan glycosyltransferase 12 [Populus euphratica]
7 Hb_001898_010 0.1164800463 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
8 Hb_017857_010 0.1168270671 - - -
9 Hb_002849_110 0.1239506268 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
10 Hb_000172_080 0.1264102177 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
11 Hb_000776_050 0.1292322905 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
12 Hb_005000_050 0.1313469496 - - PREDICTED: tetraspanin-2 [Jatropha curcas]
13 Hb_012787_040 0.131510722 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
14 Hb_008380_010 0.1315805169 - - PREDICTED: PRA1 family protein B4-like [Camelina sativa]
15 Hb_158696_010 0.1336302012 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
16 Hb_005375_070 0.1339578865 transcription factor TF Family: MYB-related PREDICTED: protein LHY [Jatropha curcas]
17 Hb_013607_010 0.1345915062 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]
18 Hb_007120_010 0.1367700824 - - PREDICTED: uncharacterized protein LOC105634737 [Jatropha curcas]
19 Hb_004712_160 0.1378974014 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
20 Hb_000373_250 0.1380395158 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]

Gene co-expression network

sample Hb_098160_010 Hb_098160_010 Hb_001405_060 Hb_001405_060 Hb_098160_010--Hb_001405_060 Hb_007574_050 Hb_007574_050 Hb_098160_010--Hb_007574_050 Hb_002234_200 Hb_002234_200 Hb_098160_010--Hb_002234_200 Hb_000363_110 Hb_000363_110 Hb_098160_010--Hb_000363_110 Hb_005282_010 Hb_005282_010 Hb_098160_010--Hb_005282_010 Hb_001898_010 Hb_001898_010 Hb_098160_010--Hb_001898_010 Hb_001405_060--Hb_005282_010 Hb_001405_060--Hb_002234_200 Hb_002849_110 Hb_002849_110 Hb_001405_060--Hb_002849_110 Hb_000373_250 Hb_000373_250 Hb_001405_060--Hb_000373_250 Hb_003633_150 Hb_003633_150 Hb_001405_060--Hb_003633_150 Hb_007574_050--Hb_001898_010 Hb_005375_070 Hb_005375_070 Hb_007574_050--Hb_005375_070 Hb_002936_030 Hb_002936_030 Hb_007574_050--Hb_002936_030 Hb_000402_030 Hb_000402_030 Hb_007574_050--Hb_000402_030 Hb_007574_050--Hb_001405_060 Hb_002234_200--Hb_005282_010 Hb_013607_010 Hb_013607_010 Hb_002234_200--Hb_013607_010 Hb_002234_200--Hb_000363_110 Hb_008948_110 Hb_008948_110 Hb_002234_200--Hb_008948_110 Hb_000397_090 Hb_000397_090 Hb_000363_110--Hb_000397_090 Hb_001345_030 Hb_001345_030 Hb_000363_110--Hb_001345_030 Hb_000363_110--Hb_013607_010 Hb_000003_420 Hb_000003_420 Hb_000363_110--Hb_000003_420 Hb_005282_010--Hb_000373_250 Hb_005282_010--Hb_003633_150 Hb_005282_010--Hb_002849_110 Hb_001898_010--Hb_005375_070 Hb_001898_010--Hb_000402_030 Hb_004712_160 Hb_004712_160 Hb_001898_010--Hb_004712_160 Hb_009476_110 Hb_009476_110 Hb_001898_010--Hb_009476_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.57144 63.7534 19.1779 26.8891 1.70993 2.44311
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2 0.65458 0.982336 9.1421 6.27581

CAGE analysis