Hb_000397_090

Information

Type -
Description -
Location Contig397: 196503-197138
Sequence    

Annotation

kegg
ID tcc:TCM_038230
description Serine-rich protein-related
nr
ID XP_012081129.1
description PREDICTED: uncharacterized protein LOC105641235 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KDB1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16982 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 007_I24.ab1: 196447-197249 , 027_N15.ab1: 196566-197249 , 039_J16.ab1: 196500-197249 , 050_B01.ab1: 196583-197178

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000397_090 0.0 - - PREDICTED: uncharacterized protein LOC105641235 [Jatropha curcas]
2 Hb_000363_110 0.0848414213 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 21 [Jatropha curcas]
3 Hb_001345_030 0.0970723259 - - hypothetical protein POPTR_0007s10390g, partial [Populus trichocarpa]
4 Hb_000003_420 0.0991034112 - - o-methyltransferase, putative [Ricinus communis]
5 Hb_006911_060 0.1234297536 - - hypothetical protein CISIN_1g000594mg [Citrus sinensis]
6 Hb_006698_020 0.1247892693 - - hypothetical protein JCGZ_04585 [Jatropha curcas]
7 Hb_000359_080 0.1288568221 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
8 Hb_002234_200 0.1315517522 - - PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]
9 Hb_000331_710 0.1321176022 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
10 Hb_077995_010 0.1331993696 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
11 Hb_006052_040 0.1346340901 - - pyruvate decarboxylase [Hevea brasiliensis]
12 Hb_073119_010 0.1364870227 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
13 Hb_009247_020 0.1367652984 - - hypothetical protein JCGZ_04985 [Jatropha curcas]
14 Hb_000705_130 0.138504755 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001504_270 0.140904505 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
16 Hb_021596_070 0.1412395076 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
17 Hb_000000_070 0.1415919001 - - allene oxide synthase [Hevea brasiliensis]
18 Hb_000473_080 0.1416981258 - - PREDICTED: lipase-like PAD4 [Populus euphratica]
19 Hb_000522_130 0.1420578161 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
20 Hb_000172_080 0.143115709 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]

Gene co-expression network

sample Hb_000397_090 Hb_000397_090 Hb_000363_110 Hb_000363_110 Hb_000397_090--Hb_000363_110 Hb_001345_030 Hb_001345_030 Hb_000397_090--Hb_001345_030 Hb_000003_420 Hb_000003_420 Hb_000397_090--Hb_000003_420 Hb_006911_060 Hb_006911_060 Hb_000397_090--Hb_006911_060 Hb_006698_020 Hb_006698_020 Hb_000397_090--Hb_006698_020 Hb_000359_080 Hb_000359_080 Hb_000397_090--Hb_000359_080 Hb_000363_110--Hb_001345_030 Hb_002234_200 Hb_002234_200 Hb_000363_110--Hb_002234_200 Hb_013607_010 Hb_013607_010 Hb_000363_110--Hb_013607_010 Hb_098160_010 Hb_098160_010 Hb_000363_110--Hb_098160_010 Hb_000363_110--Hb_000003_420 Hb_077995_010 Hb_077995_010 Hb_001345_030--Hb_077995_010 Hb_000172_080 Hb_000172_080 Hb_001345_030--Hb_000172_080 Hb_004166_010 Hb_004166_010 Hb_001345_030--Hb_004166_010 Hb_001345_030--Hb_000359_080 Hb_000473_080 Hb_000473_080 Hb_000003_420--Hb_000473_080 Hb_029866_050 Hb_029866_050 Hb_000003_420--Hb_029866_050 Hb_073119_010 Hb_073119_010 Hb_000003_420--Hb_073119_010 Hb_000003_420--Hb_006698_020 Hb_001504_270 Hb_001504_270 Hb_006911_060--Hb_001504_270 Hb_006052_040 Hb_006052_040 Hb_006911_060--Hb_006052_040 Hb_012702_010 Hb_012702_010 Hb_006911_060--Hb_012702_010 Hb_009247_020 Hb_009247_020 Hb_006911_060--Hb_009247_020 Hb_183539_010 Hb_183539_010 Hb_006911_060--Hb_183539_010 Hb_013720_010 Hb_013720_010 Hb_006698_020--Hb_013720_010 Hb_008667_030 Hb_008667_030 Hb_006698_020--Hb_008667_030 Hb_000000_070 Hb_000000_070 Hb_006698_020--Hb_000000_070 Hb_006698_020--Hb_029866_050 Hb_000331_710 Hb_000331_710 Hb_006698_020--Hb_000331_710 Hb_002529_080 Hb_002529_080 Hb_006698_020--Hb_002529_080 Hb_000359_080--Hb_000172_080 Hb_000359_080--Hb_000473_080 Hb_000359_080--Hb_029866_050 Hb_000359_080--Hb_000003_420 Hb_000103_400 Hb_000103_400 Hb_000359_080--Hb_000103_400 Hb_000359_080--Hb_000363_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.28866 188.302 38.5886 36.8806 4.56484 1.72037
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.463494 1.02006 0.385444 24.2133 20.0592

CAGE analysis