Hb_183539_010

Information

Type -
Description -
Location Contig183539: 3-605
Sequence    

Annotation

kegg
ID pop:POPTR_0005s04441g
description hypothetical protein
nr
ID XP_006382687.1
description hypothetical protein POPTR_0005s04441g [Populus trichocarpa]
swissprot
ID Q42484
description Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1
trembl
ID U5GDY5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s04441g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_183539_010 0.0 - - hypothetical protein POPTR_0005s04441g [Populus trichocarpa]
2 Hb_017434_020 0.1180294299 transcription factor TF Family: C2H2 Zinc finger protein 4 [Populus trichocarpa]
3 Hb_000506_140 0.130202821 - - hypothetical protein PRUPE_ppb019425mg [Prunus persica]
4 Hb_000087_180 0.141028374 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006911_060 0.1471060492 - - hypothetical protein CISIN_1g000594mg [Citrus sinensis]
6 Hb_000506_130 0.1577125935 - - DGCR14-related family protein [Populus trichocarpa]
7 Hb_001529_020 0.1625632885 - - ankyrin repeat-containing protein, putative [Ricinus communis]
8 Hb_052113_020 0.164208447 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
9 Hb_016404_010 0.1656464491 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
10 Hb_127628_010 0.1674336119 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
11 Hb_042553_010 0.1686367649 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
12 Hb_000431_030 0.1697697369 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
13 Hb_012760_060 0.1719604254 - - PREDICTED: uncharacterized protein LOC105647085 isoform X1 [Jatropha curcas]
14 Hb_107495_050 0.1732577539 transcription factor TF Family: MIKC mads box protein, putative [Ricinus communis]
15 Hb_002311_490 0.1749707977 - - PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]
16 Hb_001504_270 0.1764552979 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
17 Hb_087468_010 0.179524419 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
18 Hb_185080_010 0.1798262563 - - -
19 Hb_012423_020 0.1806963055 - - hypothetical protein JCGZ_20730 [Jatropha curcas]
20 Hb_013607_010 0.1807487607 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]

Gene co-expression network

sample Hb_183539_010 Hb_183539_010 Hb_017434_020 Hb_017434_020 Hb_183539_010--Hb_017434_020 Hb_000506_140 Hb_000506_140 Hb_183539_010--Hb_000506_140 Hb_000087_180 Hb_000087_180 Hb_183539_010--Hb_000087_180 Hb_006911_060 Hb_006911_060 Hb_183539_010--Hb_006911_060 Hb_000506_130 Hb_000506_130 Hb_183539_010--Hb_000506_130 Hb_001529_020 Hb_001529_020 Hb_183539_010--Hb_001529_020 Hb_017434_020--Hb_000087_180 Hb_017434_020--Hb_000506_130 Hb_017434_020--Hb_000506_140 Hb_005183_010 Hb_005183_010 Hb_017434_020--Hb_005183_010 Hb_004607_180 Hb_004607_180 Hb_017434_020--Hb_004607_180 Hb_000796_200 Hb_000796_200 Hb_000506_140--Hb_000796_200 Hb_002311_490 Hb_002311_490 Hb_000506_140--Hb_002311_490 Hb_016404_010 Hb_016404_010 Hb_000506_140--Hb_016404_010 Hb_000465_330 Hb_000465_330 Hb_000506_140--Hb_000465_330 Hb_000506_140--Hb_000506_130 Hb_116349_090 Hb_116349_090 Hb_000506_140--Hb_116349_090 Hb_000087_180--Hb_005183_010 Hb_004968_050 Hb_004968_050 Hb_000087_180--Hb_004968_050 Hb_000087_180--Hb_000506_130 Hb_005714_140 Hb_005714_140 Hb_000087_180--Hb_005714_140 Hb_000417_230 Hb_000417_230 Hb_000087_180--Hb_000417_230 Hb_001504_270 Hb_001504_270 Hb_006911_060--Hb_001504_270 Hb_000397_090 Hb_000397_090 Hb_006911_060--Hb_000397_090 Hb_006052_040 Hb_006052_040 Hb_006911_060--Hb_006052_040 Hb_012702_010 Hb_012702_010 Hb_006911_060--Hb_012702_010 Hb_009247_020 Hb_009247_020 Hb_006911_060--Hb_009247_020 Hb_000245_270 Hb_000245_270 Hb_000506_130--Hb_000245_270 Hb_052113_020 Hb_052113_020 Hb_000506_130--Hb_052113_020 Hb_029238_020 Hb_029238_020 Hb_000506_130--Hb_029238_020 Hb_004143_050 Hb_004143_050 Hb_000506_130--Hb_004143_050 Hb_002042_190 Hb_002042_190 Hb_001529_020--Hb_002042_190 Hb_007305_040 Hb_007305_040 Hb_001529_020--Hb_007305_040 Hb_001529_020--Hb_004607_180 Hb_152764_010 Hb_152764_010 Hb_001529_020--Hb_152764_010 Hb_000625_040 Hb_000625_040 Hb_001529_020--Hb_000625_040 Hb_007371_010 Hb_007371_010 Hb_001529_020--Hb_007371_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.818335 20.161 1.64584 6.24288 0.0840087 1.15144
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.137873 1.13032 0.762828

CAGE analysis