Hb_152764_010

Information

Type -
Description -
Location Contig152764: 4-429
Sequence    

Annotation

kegg
ID rcu:RCOM_0885080
description Disease resistance protein RPS5, putative
nr
ID XP_002522629.1
description Disease resistance protein RPS5, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S9G0
description Disease resistance protein RPS5, putative OS=Ricinus communis GN=RCOM_0885080 PE=4 SV=1
Gene Ontology
ID GO:0032550
description nb-arc domain-containing disease resistance

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_152764_010 0.0 - - Disease resistance protein RPS5, putative [Ricinus communis]
2 Hb_001529_020 0.1411683621 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_007371_010 0.1458707657 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT-like [Populus euphratica]
4 Hb_133646_010 0.157324095 - - hypothetical protein RCOM_1044030 [Ricinus communis]
5 Hb_000336_160 0.1582300617 - - ATP binding protein, putative [Ricinus communis]
6 Hb_027913_010 0.1593544359 - - ankyrin repeat-containing protein, putative [Ricinus communis]
7 Hb_001510_050 0.160232786 - - zinc finger protein, putative [Ricinus communis]
8 Hb_000627_140 0.1622774578 - - ATP binding protein, putative [Ricinus communis]
9 Hb_066262_010 0.1642520339 - - hypothetical protein JCGZ_14798 [Jatropha curcas]
10 Hb_001190_020 0.1669573552 - - ankyrin repeat-containing protein, putative [Ricinus communis]
11 Hb_000656_360 0.1694396218 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
12 Hb_004656_030 0.1726498498 - - putative pectin methylesterase family protein [Populus trichocarpa]
13 Hb_000369_150 0.1735439464 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20185 [Jatropha curcas]
14 Hb_010368_040 0.1737728037 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004098_010 0.1756082188 - - -
16 Hb_176149_010 0.1795057777 - - hypothetical protein JCGZ_16793 [Jatropha curcas]
17 Hb_006519_010 0.1801889119 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 [Vitis vinifera]
18 Hb_174829_040 0.1804634137 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
19 Hb_004161_010 0.1834008138 - - hypothetical protein JCGZ_21278 [Jatropha curcas]
20 Hb_119441_010 0.1846644611 - - hypothetical protein CISIN_1g0477971mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_152764_010 Hb_152764_010 Hb_001529_020 Hb_001529_020 Hb_152764_010--Hb_001529_020 Hb_007371_010 Hb_007371_010 Hb_152764_010--Hb_007371_010 Hb_133646_010 Hb_133646_010 Hb_152764_010--Hb_133646_010 Hb_000336_160 Hb_000336_160 Hb_152764_010--Hb_000336_160 Hb_027913_010 Hb_027913_010 Hb_152764_010--Hb_027913_010 Hb_001510_050 Hb_001510_050 Hb_152764_010--Hb_001510_050 Hb_002042_190 Hb_002042_190 Hb_001529_020--Hb_002042_190 Hb_007305_040 Hb_007305_040 Hb_001529_020--Hb_007305_040 Hb_004607_180 Hb_004607_180 Hb_001529_020--Hb_004607_180 Hb_000625_040 Hb_000625_040 Hb_001529_020--Hb_000625_040 Hb_001529_020--Hb_007371_010 Hb_007371_010--Hb_001510_050 Hb_010368_040 Hb_010368_040 Hb_007371_010--Hb_010368_040 Hb_007371_010--Hb_133646_010 Hb_007371_010--Hb_000336_160 Hb_001693_030 Hb_001693_030 Hb_007371_010--Hb_001693_030 Hb_004098_010 Hb_004098_010 Hb_007371_010--Hb_004098_010 Hb_176149_010 Hb_176149_010 Hb_133646_010--Hb_176149_010 Hb_000656_360 Hb_000656_360 Hb_133646_010--Hb_000656_360 Hb_133646_010--Hb_004098_010 Hb_133646_010--Hb_027913_010 Hb_000347_370 Hb_000347_370 Hb_133646_010--Hb_000347_370 Hb_133646_010--Hb_001510_050 Hb_174829_040 Hb_174829_040 Hb_000336_160--Hb_174829_040 Hb_001190_020 Hb_001190_020 Hb_000336_160--Hb_001190_020 Hb_001437_200 Hb_001437_200 Hb_000336_160--Hb_001437_200 Hb_004161_010 Hb_004161_010 Hb_000336_160--Hb_004161_010 Hb_000627_140 Hb_000627_140 Hb_000336_160--Hb_000627_140 Hb_004656_030 Hb_004656_030 Hb_027913_010--Hb_004656_030 Hb_027913_010--Hb_001190_020 Hb_022630_010 Hb_022630_010 Hb_027913_010--Hb_022630_010 Hb_027913_010--Hb_000656_360 Hb_027913_010--Hb_001437_200 Hb_078477_010 Hb_078477_010 Hb_027913_010--Hb_078477_010 Hb_001510_050--Hb_004098_010 Hb_000369_150 Hb_000369_150 Hb_001510_050--Hb_000369_150 Hb_001510_050--Hb_176149_010 Hb_000128_010 Hb_000128_010 Hb_001510_050--Hb_000128_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.269386 5.74613 0.0628146 0.79018 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.294766 0

CAGE analysis