Hb_007371_010

Information

Type transcription factor
Description TF Family: GRAS
Location Contig7371: 8547-9818
Sequence    

Annotation

kegg
ID tcc:TCM_019978
description GRAS family transcription factor
nr
ID XP_011037138.1
description PREDICTED: protein SHORT-ROOT-like [Populus euphratica]
swissprot
ID Q9SZF7
description Protein SHORT-ROOT OS=Arabidopsis thaliana GN=SHR PE=1 SV=1
trembl
ID A0A061EK79
description GRAS family transcription factor OS=Theobroma cacao GN=TCM_019978 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein short-root-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56222: 8336-8753
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007371_010 0.0 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT-like [Populus euphratica]
2 Hb_001510_050 0.0612022532 - - zinc finger protein, putative [Ricinus communis]
3 Hb_010368_040 0.111902919 - - conserved hypothetical protein [Ricinus communis]
4 Hb_133646_010 0.112824145 - - hypothetical protein RCOM_1044030 [Ricinus communis]
5 Hb_000336_160 0.1132084806 - - ATP binding protein, putative [Ricinus communis]
6 Hb_001693_030 0.1155598689 - - PREDICTED: reticuline oxidase-like [Jatropha curcas]
7 Hb_004098_010 0.1233493331 - - -
8 Hb_001190_020 0.1291035811 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_000369_150 0.1311715373 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20185 [Jatropha curcas]
10 Hb_013862_010 0.1345354663 - - PREDICTED: uncharacterized protein LOC105650642 [Jatropha curcas]
11 Hb_027913_010 0.1358881153 - - ankyrin repeat-containing protein, putative [Ricinus communis]
12 Hb_176149_010 0.1361162895 - - hypothetical protein JCGZ_16793 [Jatropha curcas]
13 Hb_001998_130 0.1363411869 transcription factor TF Family: WRKY WRKY transcription factor 35 family protein [Populus trichocarpa]
14 Hb_002639_090 0.1393819518 - - hypothetical protein JCGZ_08134 [Jatropha curcas]
15 Hb_117335_020 0.1404328844 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
16 Hb_000499_050 0.1406035384 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_000592_040 0.14216353 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000426_070 0.1423247573 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
19 Hb_000994_090 0.1432953948 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
20 Hb_023675_020 0.1434063628 - - acc synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007371_010 Hb_007371_010 Hb_001510_050 Hb_001510_050 Hb_007371_010--Hb_001510_050 Hb_010368_040 Hb_010368_040 Hb_007371_010--Hb_010368_040 Hb_133646_010 Hb_133646_010 Hb_007371_010--Hb_133646_010 Hb_000336_160 Hb_000336_160 Hb_007371_010--Hb_000336_160 Hb_001693_030 Hb_001693_030 Hb_007371_010--Hb_001693_030 Hb_004098_010 Hb_004098_010 Hb_007371_010--Hb_004098_010 Hb_001510_050--Hb_004098_010 Hb_000369_150 Hb_000369_150 Hb_001510_050--Hb_000369_150 Hb_001510_050--Hb_133646_010 Hb_176149_010 Hb_176149_010 Hb_001510_050--Hb_176149_010 Hb_000128_010 Hb_000128_010 Hb_001510_050--Hb_000128_010 Hb_001190_020 Hb_001190_020 Hb_010368_040--Hb_001190_020 Hb_004059_010 Hb_004059_010 Hb_010368_040--Hb_004059_010 Hb_006519_010 Hb_006519_010 Hb_010368_040--Hb_006519_010 Hb_039757_010 Hb_039757_010 Hb_010368_040--Hb_039757_010 Hb_001405_180 Hb_001405_180 Hb_010368_040--Hb_001405_180 Hb_009897_030 Hb_009897_030 Hb_010368_040--Hb_009897_030 Hb_133646_010--Hb_176149_010 Hb_000656_360 Hb_000656_360 Hb_133646_010--Hb_000656_360 Hb_133646_010--Hb_004098_010 Hb_027913_010 Hb_027913_010 Hb_133646_010--Hb_027913_010 Hb_000347_370 Hb_000347_370 Hb_133646_010--Hb_000347_370 Hb_174829_040 Hb_174829_040 Hb_000336_160--Hb_174829_040 Hb_000336_160--Hb_001190_020 Hb_001437_200 Hb_001437_200 Hb_000336_160--Hb_001437_200 Hb_004161_010 Hb_004161_010 Hb_000336_160--Hb_004161_010 Hb_000627_140 Hb_000627_140 Hb_000336_160--Hb_000627_140 Hb_000499_050 Hb_000499_050 Hb_001693_030--Hb_000499_050 Hb_000592_040 Hb_000592_040 Hb_001693_030--Hb_000592_040 Hb_000426_070 Hb_000426_070 Hb_001693_030--Hb_000426_070 Hb_117335_020 Hb_117335_020 Hb_001693_030--Hb_117335_020 Hb_000994_090 Hb_000994_090 Hb_001693_030--Hb_000994_090 Hb_002851_050 Hb_002851_050 Hb_001693_030--Hb_002851_050 Hb_004098_010--Hb_000128_010 Hb_004098_010--Hb_000369_150 Hb_004098_010--Hb_176149_010 Hb_119441_010 Hb_119441_010 Hb_004098_010--Hb_119441_010 Hb_006351_080 Hb_006351_080 Hb_004098_010--Hb_006351_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0538318 76.0114 0.252913 13.7036 0.0632367 0.0462971
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.11006 0.0618184

CAGE analysis