Hb_027913_010

Information

Type -
Description -
Location Contig27913: 8673-12417
Sequence    

Annotation

kegg
ID rcu:RCOM_0909020
description ankyrin repeat-containing protein, putative
nr
ID XP_002517018.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RTE9
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0909020 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29130: 8765-9089 , PASA_asmbl_29131: 10717-11533
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027913_010 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_004656_030 0.0591239776 - - putative pectin methylesterase family protein [Populus trichocarpa]
3 Hb_001190_020 0.0897624093 - - ankyrin repeat-containing protein, putative [Ricinus communis]
4 Hb_022630_010 0.0905604797 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
5 Hb_000656_360 0.0979815064 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
6 Hb_001437_200 0.0992488272 - - PREDICTED: UDP-glycosyltransferase 86A2 [Jatropha curcas]
7 Hb_078477_010 0.0998994539 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
8 Hb_004161_010 0.1006521064 - - hypothetical protein JCGZ_21278 [Jatropha curcas]
9 Hb_133646_010 0.1031796242 - - hypothetical protein RCOM_1044030 [Ricinus communis]
10 Hb_089140_020 0.106207816 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
11 Hb_006519_010 0.1065204426 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 [Vitis vinifera]
12 Hb_001749_020 0.1139399465 - - hypothetical protein CISIN_1g042220mg, partial [Citrus sinensis]
13 Hb_003847_140 0.1177358647 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
14 Hb_000959_290 0.119525909 - - PREDICTED: uncharacterized protein LOC105636589 [Jatropha curcas]
15 Hb_001168_100 0.1227431701 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Citrus sinensis]
16 Hb_029866_140 0.1263579555 - - PREDICTED: hevamine-A [Jatropha curcas]
17 Hb_189242_010 0.127738441 - - hypothetical protein B456_013G0075002, partial [Gossypium raimondii]
18 Hb_004994_070 0.1311565893 - - PREDICTED: BON1-associated protein 2 [Jatropha curcas]
19 Hb_005648_030 0.1332251373 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH18-like [Jatropha curcas]
20 Hb_000879_100 0.1335394208 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]

Gene co-expression network

sample Hb_027913_010 Hb_027913_010 Hb_004656_030 Hb_004656_030 Hb_027913_010--Hb_004656_030 Hb_001190_020 Hb_001190_020 Hb_027913_010--Hb_001190_020 Hb_022630_010 Hb_022630_010 Hb_027913_010--Hb_022630_010 Hb_000656_360 Hb_000656_360 Hb_027913_010--Hb_000656_360 Hb_001437_200 Hb_001437_200 Hb_027913_010--Hb_001437_200 Hb_078477_010 Hb_078477_010 Hb_027913_010--Hb_078477_010 Hb_004656_030--Hb_022630_010 Hb_004656_030--Hb_000656_360 Hb_003847_140 Hb_003847_140 Hb_004656_030--Hb_003847_140 Hb_004656_030--Hb_078477_010 Hb_001749_020 Hb_001749_020 Hb_004656_030--Hb_001749_020 Hb_006519_010 Hb_006519_010 Hb_001190_020--Hb_006519_010 Hb_000959_290 Hb_000959_290 Hb_001190_020--Hb_000959_290 Hb_010368_040 Hb_010368_040 Hb_001190_020--Hb_010368_040 Hb_004059_010 Hb_004059_010 Hb_001190_020--Hb_004059_010 Hb_004994_070 Hb_004994_070 Hb_001190_020--Hb_004994_070 Hb_022630_010--Hb_078477_010 Hb_005648_030 Hb_005648_030 Hb_022630_010--Hb_005648_030 Hb_002193_050 Hb_002193_050 Hb_022630_010--Hb_002193_050 Hb_001403_070 Hb_001403_070 Hb_022630_010--Hb_001403_070 Hb_000656_360--Hb_003847_140 Hb_029866_140 Hb_029866_140 Hb_000656_360--Hb_029866_140 Hb_176149_010 Hb_176149_010 Hb_000656_360--Hb_176149_010 Hb_066262_010 Hb_066262_010 Hb_000656_360--Hb_066262_010 Hb_119441_010 Hb_119441_010 Hb_000656_360--Hb_119441_010 Hb_000369_150 Hb_000369_150 Hb_000656_360--Hb_000369_150 Hb_004161_010 Hb_004161_010 Hb_001437_200--Hb_004161_010 Hb_001437_200--Hb_004656_030 Hb_001437_200--Hb_003847_140 Hb_005081_060 Hb_005081_060 Hb_001437_200--Hb_005081_060 Hb_000039_100 Hb_000039_100 Hb_001437_200--Hb_000039_100 Hb_078477_010--Hb_005648_030 Hb_000333_150 Hb_000333_150 Hb_078477_010--Hb_000333_150 Hb_001405_260 Hb_001405_260 Hb_078477_010--Hb_001405_260 Hb_044026_010 Hb_044026_010 Hb_078477_010--Hb_044026_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 25.9382 0.834433 2.32646 0.00866078 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.36115 0

CAGE analysis